Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022 T)

Amrita Pati, Kurt la Butti, Rüdiger Pukall, Matt Nolan, Tijana Glavina del Rio, Hope Tice, Jan Fang Cheng, Susan Lucas, Feng Chen, Alex Copeland, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Sam Pitluck, David Bruce, Lynne Goodwin, Miriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. JeffriesAmy Chen, Krishna Palaniappan, Patrick Chain, Thomas Brettin, Johannes Sikorski, Manfred Rohde, Markus Göker, Jim Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Alla Lapidus

Research output: Contribution to journalArticle

17 Citations (Scopus)

Abstract

Sphaerobacter thermophilus Demharter et al. 1989 is the sole and type species of the genus Sphaerobacter, which is the type genus of the family Sphaerobacteraceae, the order Sphaerobacterales and the subclass Sphaerobacteridae. Phylogenetically, it belongs to the genomically little studied class of the Thermomicrobia in the bacterial phylum Chloroflexi. Here, the genome of strain S 6022 T is described which is an obligate aerobe that was originally isolated from an aerated laboratory-scale fermentor that was pulse fed with municipal sewage sludge. We describe the features of this organism, together with the complete genome and annotation. This is the first complete genome sequence of the thermomicrobial subclass Sphaerobacteridae, and the second sequence from the chloroflexal class Thermomicrobia. The 3,993,764 bp genome with its 3,525 protein-coding and 57 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)49-56
Number of pages8
JournalStandards in Genomic Sciences
Volume2
Issue number1
DOIs
StatePublished - 2010

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Genome
Sewage
Chloroflexi
Encyclopedias
Archaea
Bioreactors
RNA
Bacteria
Genes
Proteins
IH 764-3

Keywords

  • GEBA
  • Non-motile
  • Non-sporeforming
  • Obligate aerobic
  • Pleomorphic
  • Sewage sludge isolate
  • Sphaerobacteridae
  • Thermomicrobia
  • Thermophile

ASJC Scopus subject areas

  • Genetics

Cite this

Pati, A., la Butti, K., Pukall, R., Nolan, M., del Rio, T. G., Tice, H., ... Lapidus, A. (2010). Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022 T). Standards in Genomic Sciences, 2(1), 49-56. https://doi.org/10.4056/sigs.601105

Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022 T). / Pati, Amrita; la Butti, Kurt; Pukall, Rüdiger; Nolan, Matt; del Rio, Tijana Glavina; Tice, Hope; Cheng, Jan Fang; Lucas, Susan; Chen, Feng; Copeland, Alex; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Pitluck, Sam; Bruce, David; Goodwin, Lynne; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Chen, Amy; Palaniappan, Krishna; Chain, Patrick; Brettin, Thomas; Sikorski, Johannes; Rohde, Manfred; Göker, Markus; Bristow, Jim; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Lapidus, Alla.

In: Standards in Genomic Sciences, Vol. 2, No. 1, 2010, p. 49-56.

Research output: Contribution to journalArticle

Pati, A, la Butti, K, Pukall, R, Nolan, M, del Rio, TG, Tice, H, Cheng, JF, Lucas, S, Chen, F, Copeland, A, Ivanova, N, Mavromatis, K, Mikhailova, N, Pitluck, S, Bruce, D, Goodwin, L, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Chen, A, Palaniappan, K, Chain, P, Brettin, T, Sikorski, J, Rohde, M, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Lapidus, A 2010, 'Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022 T)', Standards in Genomic Sciences, vol. 2, no. 1, pp. 49-56. https://doi.org/10.4056/sigs.601105
Pati, Amrita ; la Butti, Kurt ; Pukall, Rüdiger ; Nolan, Matt ; del Rio, Tijana Glavina ; Tice, Hope ; Cheng, Jan Fang ; Lucas, Susan ; Chen, Feng ; Copeland, Alex ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Mikhailova, Natalia ; Pitluck, Sam ; Bruce, David ; Goodwin, Lynne ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Chen, Amy ; Palaniappan, Krishna ; Chain, Patrick ; Brettin, Thomas ; Sikorski, Johannes ; Rohde, Manfred ; Göker, Markus ; Bristow, Jim ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Lapidus, Alla. / Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022 T). In: Standards in Genomic Sciences. 2010 ; Vol. 2, No. 1. pp. 49-56.
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AU - Cheng, Jan Fang

AU - Lucas, Susan

AU - Chen, Feng

AU - Copeland, Alex

AU - Ivanova, Natalia

AU - Mavromatis, Konstantinos

AU - Mikhailova, Natalia

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AU - Bruce, David

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AU - Land, Miriam

AU - Hauser, Loren

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