Complete genome sequence of Saccharomonospora viridis type strain (P101 T)

Amrita Pati, Johannes Sikorski, Matt Nolan, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Susan Lucas, Feng Chen, Hope Tice, Sam Pitluck, Jan Fang Cheng, Olga Chertkov, Thomas Brettin, Cliff Han, John C. Detter, Cheryl Kuske, David Bruce, Lynne Goodwin, Patrick Chain, Patrik D'haeseleerAmy Chen, Krishna Palaniappan, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Manfred Rohde, Brian J. Tindall, Markus Göker, Jim Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk

Research output: Contribution to journalArticle

17 Citations (Scopus)

Abstract

Saccharomonospora viridis (Schuurmans et al. 1956) Nonomurea and Ohara 1971 is the type species of the genus Saccharomonospora which belongs to the family Pseudonocardiaceae. S. viridis is of interest because it is a Gram-negative organism classified among the usually Gram-positive actinomycetes. Members of the species are frequently found in hot compost and hay, and its spores can cause farmer's lung disease, bagassosis, and humidifier fever. Strains of the species S. viridis have been found to metabolize the xenobiotic pentachlorophenol (PCP). The strain described in this study has been isolated from peat-bog in Ireland. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the family Pseudonocardiaceae, and the 4,308,349 bp long single replicon genome with its 3906 protein-coding and 64 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)141-149
Number of pages9
JournalStandards in Genomic Sciences
Volume1
Issue number2
DOIs
StatePublished - 2009

Fingerprint

Genome
Soil
Farmer's Lung
Encyclopedias
Pentachlorophenol
Pneumoconiosis
Replicon
Wetlands
Actinobacteria
Archaea
Xenobiotics
Spores
Ireland
Lung Diseases
Fever
RNA
Bacteria
Genes
Proteins
Humidifiers

Keywords

  • Bagassosis
  • Farmer's lung disease
  • Gram-negative actinomycete
  • Hot compost
  • Humidifier fever
  • Pentachlorophenol metabolism
  • Pseudonocardiaceae
  • Thermophile

ASJC Scopus subject areas

  • Genetics

Cite this

Pati, A., Sikorski, J., Nolan, M., Lapidus, A., Copeland, A., Glavina Del Rio, T., ... Klenk, H. P. (2009). Complete genome sequence of Saccharomonospora viridis type strain (P101 T). Standards in Genomic Sciences, 1(2), 141-149. https://doi.org/10.4056/sigs.20263

Complete genome sequence of Saccharomonospora viridis type strain (P101 T). / Pati, Amrita; Sikorski, Johannes; Nolan, Matt; Lapidus, Alla; Copeland, Alex; Glavina Del Rio, Tijana; Lucas, Susan; Chen, Feng; Tice, Hope; Pitluck, Sam; Cheng, Jan Fang; Chertkov, Olga; Brettin, Thomas; Han, Cliff; Detter, John C.; Kuske, Cheryl; Bruce, David; Goodwin, Lynne; Chain, Patrick; D'haeseleer, Patrik; Chen, Amy; Palaniappan, Krishna; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Rohde, Manfred; Tindall, Brian J.; Göker, Markus; Bristow, Jim; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

In: Standards in Genomic Sciences, Vol. 1, No. 2, 2009, p. 141-149.

Research output: Contribution to journalArticle

Pati, A, Sikorski, J, Nolan, M, Lapidus, A, Copeland, A, Glavina Del Rio, T, Lucas, S, Chen, F, Tice, H, Pitluck, S, Cheng, JF, Chertkov, O, Brettin, T, Han, C, Detter, JC, Kuske, C, Bruce, D, Goodwin, L, Chain, P, D'haeseleer, P, Chen, A, Palaniappan, K, Ivanova, N, Mavromatis, K, Mikhailova, N, Rohde, M, Tindall, BJ, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2009, 'Complete genome sequence of Saccharomonospora viridis type strain (P101 T)', Standards in Genomic Sciences, vol. 1, no. 2, pp. 141-149. https://doi.org/10.4056/sigs.20263
Pati A, Sikorski J, Nolan M, Lapidus A, Copeland A, Glavina Del Rio T et al. Complete genome sequence of Saccharomonospora viridis type strain (P101 T). Standards in Genomic Sciences. 2009;1(2):141-149. https://doi.org/10.4056/sigs.20263
Pati, Amrita ; Sikorski, Johannes ; Nolan, Matt ; Lapidus, Alla ; Copeland, Alex ; Glavina Del Rio, Tijana ; Lucas, Susan ; Chen, Feng ; Tice, Hope ; Pitluck, Sam ; Cheng, Jan Fang ; Chertkov, Olga ; Brettin, Thomas ; Han, Cliff ; Detter, John C. ; Kuske, Cheryl ; Bruce, David ; Goodwin, Lynne ; Chain, Patrick ; D'haeseleer, Patrik ; Chen, Amy ; Palaniappan, Krishna ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Mikhailova, Natalia ; Rohde, Manfred ; Tindall, Brian J. ; Göker, Markus ; Bristow, Jim ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Complete genome sequence of Saccharomonospora viridis type strain (P101 T). In: Standards in Genomic Sciences. 2009 ; Vol. 1, No. 2. pp. 141-149.
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AU - Chen, Feng

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AU - Brettin, Thomas

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