Complete genome sequence of planctomyces limnophilus type strain (mü 290 T)

Kurt Labutti, Johannes Sikorski, Susanne Schneider, Matt Nolan, Susan Lucas, Tijana Glavina del Rio, Hope Tice, Jan Fang Cheng, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun Juan ChangCynthia D. Jeffries, Brian J. Tindall, Manfred Rohde, Markus Göker, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Alla Lapidus

Research output: Contribution to journalArticle

26 Citations (Scopus)

Abstract

Planctomyces limnophilus Hirsch and Müller 1986 belongs to the order Planctomycetales, which differs from other bacterial taxa by several distinctive features such as internal cell compartmentalization, multiplication by forming buds directly from the spherical, ovoid or pear-shaped mother cell and a cell wall which is stabilized by a proteinaceous layer rather than a peptidoglycan layer. Besides Pirellula staleyi, this is the second completed genome se-quence of the family Planctomycetaceae. P. limnophilus is of interest because it differs from Pirellula by the presence of a stalk and its structure of fibril bundles, its cell shape and size, the formation of multicellular rosettes, low salt tolerance and red pigmented colonies. The 5,460,085 bp long genome with its 4,304 protein-coding and 66 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)47-56
Number of pages10
JournalStandards in Genomic Sciences
Volume3
Issue number1
DOIs
StatePublished - 2010

Fingerprint

Planctomycetales
Genome
Encyclopedias
Salt-Tolerance
Rosette Formation
Pyrus
Peptidoglycan
Cell Shape
Archaea
Cell Size
Cell Wall
Stem Cells
Cell Proliferation
RNA
Bacteria
Genes
Proteins

Keywords

  • GEBA
  • Gram-negative
  • Low salt tolerance
  • Multicellular rosettes
  • Planctomycetales
  • Planctomycetes
  • Stalk

ASJC Scopus subject areas

  • Genetics

Cite this

Labutti, K., Sikorski, J., Schneider, S., Nolan, M., Lucas, S., del Rio, T. G., ... Lapidus, A. (2010). Complete genome sequence of planctomyces limnophilus type strain (mü 290 T). Standards in Genomic Sciences, 3(1), 47-56. https://doi.org/10.4056/sigs.1052813

Complete genome sequence of planctomyces limnophilus type strain (mü 290 T). / Labutti, Kurt; Sikorski, Johannes; Schneider, Susanne; Nolan, Matt; Lucas, Susan; del Rio, Tijana Glavina; Tice, Hope; Cheng, Jan Fang; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Tindall, Brian J.; Rohde, Manfred; Göker, Markus; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Lapidus, Alla.

In: Standards in Genomic Sciences, Vol. 3, No. 1, 2010, p. 47-56.

Research output: Contribution to journalArticle

Labutti, K, Sikorski, J, Schneider, S, Nolan, M, Lucas, S, del Rio, TG, Tice, H, Cheng, JF, Goodwin, L, Pitluck, S, Liolios, K, Ivanova, N, Mavromatis, K, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Tindall, BJ, Rohde, M, Göker, M, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Lapidus, A 2010, 'Complete genome sequence of planctomyces limnophilus type strain (mü 290 T)', Standards in Genomic Sciences, vol. 3, no. 1, pp. 47-56. https://doi.org/10.4056/sigs.1052813
Labutti, Kurt ; Sikorski, Johannes ; Schneider, Susanne ; Nolan, Matt ; Lucas, Susan ; del Rio, Tijana Glavina ; Tice, Hope ; Cheng, Jan Fang ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Mikhailova, Natalia ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Tindall, Brian J. ; Rohde, Manfred ; Göker, Markus ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Lapidus, Alla. / Complete genome sequence of planctomyces limnophilus type strain (mü 290 T). In: Standards in Genomic Sciences. 2010 ; Vol. 3, No. 1. pp. 47-56.
@article{7d006519cc0541aa8d9143bfdddbd8b0,
title = "Complete genome sequence of planctomyces limnophilus type strain (m{\"u} 290 T)",
abstract = "Planctomyces limnophilus Hirsch and M{\"u}ller 1986 belongs to the order Planctomycetales, which differs from other bacterial taxa by several distinctive features such as internal cell compartmentalization, multiplication by forming buds directly from the spherical, ovoid or pear-shaped mother cell and a cell wall which is stabilized by a proteinaceous layer rather than a peptidoglycan layer. Besides Pirellula staleyi, this is the second completed genome se-quence of the family Planctomycetaceae. P. limnophilus is of interest because it differs from Pirellula by the presence of a stalk and its structure of fibril bundles, its cell shape and size, the formation of multicellular rosettes, low salt tolerance and red pigmented colonies. The 5,460,085 bp long genome with its 4,304 protein-coding and 66 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "GEBA, Gram-negative, Low salt tolerance, Multicellular rosettes, Planctomycetales, Planctomycetes, Stalk",
author = "Kurt Labutti and Johannes Sikorski and Susanne Schneider and Matt Nolan and Susan Lucas and {del Rio}, {Tijana Glavina} and Hope Tice and Cheng, {Jan Fang} and Lynne Goodwin and Sam Pitluck and Konstantinos Liolios and Natalia Ivanova and Konstantinos Mavromatis and Natalia Mikhailova and Amrita Pati and Amy Chen and Krishna Palaniappan and Miriam Land and Loren Hauser and Chang, {Yun Juan} and Jeffries, {Cynthia D.} and Tindall, {Brian J.} and Manfred Rohde and Markus G{\"o}ker and Tanja Woyke and James Bristow and Eisen, {Jonathan A} and Victor Markowitz and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter} and Alla Lapidus",
year = "2010",
doi = "10.4056/sigs.1052813",
language = "English (US)",
volume = "3",
pages = "47--56",
journal = "Environmental Microbiomes",
issn = "1944-3277",
publisher = "BioMed Central Ltd.",
number = "1",

}

TY - JOUR

T1 - Complete genome sequence of planctomyces limnophilus type strain (mü 290 T)

AU - Labutti, Kurt

AU - Sikorski, Johannes

AU - Schneider, Susanne

AU - Nolan, Matt

AU - Lucas, Susan

AU - del Rio, Tijana Glavina

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Ivanova, Natalia

AU - Mavromatis, Konstantinos

AU - Mikhailova, Natalia

AU - Pati, Amrita

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Tindall, Brian J.

AU - Rohde, Manfred

AU - Göker, Markus

AU - Woyke, Tanja

AU - Bristow, James

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

AU - Lapidus, Alla

PY - 2010

Y1 - 2010

N2 - Planctomyces limnophilus Hirsch and Müller 1986 belongs to the order Planctomycetales, which differs from other bacterial taxa by several distinctive features such as internal cell compartmentalization, multiplication by forming buds directly from the spherical, ovoid or pear-shaped mother cell and a cell wall which is stabilized by a proteinaceous layer rather than a peptidoglycan layer. Besides Pirellula staleyi, this is the second completed genome se-quence of the family Planctomycetaceae. P. limnophilus is of interest because it differs from Pirellula by the presence of a stalk and its structure of fibril bundles, its cell shape and size, the formation of multicellular rosettes, low salt tolerance and red pigmented colonies. The 5,460,085 bp long genome with its 4,304 protein-coding and 66 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Planctomyces limnophilus Hirsch and Müller 1986 belongs to the order Planctomycetales, which differs from other bacterial taxa by several distinctive features such as internal cell compartmentalization, multiplication by forming buds directly from the spherical, ovoid or pear-shaped mother cell and a cell wall which is stabilized by a proteinaceous layer rather than a peptidoglycan layer. Besides Pirellula staleyi, this is the second completed genome se-quence of the family Planctomycetaceae. P. limnophilus is of interest because it differs from Pirellula by the presence of a stalk and its structure of fibril bundles, its cell shape and size, the formation of multicellular rosettes, low salt tolerance and red pigmented colonies. The 5,460,085 bp long genome with its 4,304 protein-coding and 66 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - GEBA

KW - Gram-negative

KW - Low salt tolerance

KW - Multicellular rosettes

KW - Planctomycetales

KW - Planctomycetes

KW - Stalk

UR - http://www.scopus.com/inward/record.url?scp=79956137513&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=79956137513&partnerID=8YFLogxK

U2 - 10.4056/sigs.1052813

DO - 10.4056/sigs.1052813

M3 - Article

C2 - 21304691

AN - SCOPUS:79956137513

VL - 3

SP - 47

EP - 56

JO - Environmental Microbiomes

JF - Environmental Microbiomes

SN - 1944-3277

IS - 1

ER -