Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3 T)

Cliff Han, Stefan Spring, Alla Lapidus, Tijana Glavina del Rio, Hope Tice, Alex Copeland, Jan Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam LandLoren Hauser, Yun Juan Chang, Cynthia C. Jeffries, Elizabeth Saunders, Olga Chertkov, Thomas Brettin, Markus Göker, Manfred Rohde, Jim Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, John C. Detter

Research output: Contribution to journalArticle

23 Scopus citations

Abstract

Pedobacter heparinus (Payza and Korn 1956) Steyn et al. 1998 comb. nov. is the type species of the rapidly growing genus Pedobacter within the family Sphingobacteriaceae of the phylum 'Bacteroidetes'. P. heparinus is of interest, because it was the first isolated strain shown to grow with heparin as sole carbon and nitrogen source and because it produces several enzymes involved in the degradation of mucopolysaccharides. All available data about this species are based on a sole strain that was isolated from dry soil. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first report on a complete genome sequence of a member of the genus Pedobacter, and the 5,167,383 bp long single replicon genome with its 4287 protein-coding and 54 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)54-62
Number of pages9
JournalStandards in Genomic Sciences
Volume1
Issue number1
DOIs
StatePublished - 2009

Keywords

  • Dry soil
  • Flexible rods
  • Gram-negative
  • Heparinase producer
  • Mesophile
  • Sphingobacteriaceae
  • Strictly aerobic

ASJC Scopus subject areas

  • Genetics

Fingerprint Dive into the research topics of 'Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3 <sup>T</sup>)'. Together they form a unique fingerprint.

  • Cite this

    Han, C., Spring, S., Lapidus, A., del Rio, T. G., Tice, H., Copeland, A., Cheng, J. F., Lucas, S., Chen, F., Nolan, M., Bruce, D., Goodwin, L., Pitluck, S., Ivanova, N., Mavromatis, K., Mikhailova, N., Pati, A., Chen, A., Palaniappan, K., ... Detter, J. C. (2009). Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3 T). Standards in Genomic Sciences, 1(1), 54-62. https://doi.org/10.4056/sigs.22138