Complete genome sequence of oceanithermus profundus type strain (506 T)

Amrita Pati, Xiaojing Zhang, Alla Lapidus, Matt Nolan, Susan Lucas, Tijana Glavina del Rio, Hope Tice, Jan Fang Cheng, Roxane Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Amy Chen, Krishna Palaniappan, Loren Hauser, Cynthia D. JeffriesEvelyne Marie Brambilla, Alina Röhl, Romano Mwirichia, Manfred Rohde, Brian J. Tindall, Johannes Sikorski, Reinhard Wirth, Markus Göker, Tanja Woyke, John C. Detter, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Miriam Land

Research output: Contribution to journalArticle

3 Scopus citations

Abstract

Oceanithermus profundus Miroshnichenko et al. 2003 is the type species of the genus Ocea-nithermus, which belongs to the family Thermaceae. The genus currently comprises two spe-cies whose members are thermophilic and are able to reduce sulfur compounds and nitrite. The organism is adapted to the salinity of sea water, is able to utilize a broad range of carbo-hydrates, some proteinaceous substrates, organic acids and alcohols. This is the first com-pleted genome sequence of a member of the genus Oceanithermus and the fourth sequence from the family Thermaceae. The 2,439,291 bp long genome with its 2,391 protein-coding and 54 RNA genes consists of one chromosome and a 135,351 bp long plasmid, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)210-220
Number of pages11
JournalStandards in Genomic Sciences
Volume4
Issue number2
DOIs
StatePublished - 2011

Keywords

  • Chemolithoheterotrophic
  • GEBA
  • Gram-negative
  • Hydrothermal vent
  • Microaerophilic
  • Moderate thermo-philic
  • Neutrophilic
  • Nitrate-reducing
  • Non-motile
  • Thermaceae

ASJC Scopus subject areas

  • Genetics

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    Pati, A., Zhang, X., Lapidus, A., Nolan, M., Lucas, S., del Rio, T. G., Tice, H., Cheng, J. F., Tapia, R., Han, C., Goodwin, L., Pitluck, S., Liolios, K., Pagani, I., Ivanova, N., Mavromatis, K., Chen, A., Palaniappan, K., Hauser, L., ... Land, M. (2011). Complete genome sequence of oceanithermus profundus type strain (506 T). Standards in Genomic Sciences, 4(2), 210-220. https://doi.org/10.4056/sigs.1734292