Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509 T)

Hui Sun, Alla Lapidus, Matt Nolan, Susan Lucas, Tijana Glavina del Rio, Hope Tice, Jan Fang Cheng, Roxane Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren HauserYun Juan Chang, Cynthia D. Jeffries, Olivier Duplex Ngatchou Djao, Manfred Rohde, Johannes Sikorski, Markus Göker, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk

Research output: Contribution to journalArticle

25 Scopus citations

Abstract

Nocardiopsis dassonvillei (Brocq-Rousseau 1904) Meyer 1976 is the type species of the genus Nocardiopsis, which in turn is the type genus of the family Nocardiopsaceae. This species is of interest because of its ecological versatility. Members of N. dassonvillei have been isolated from a large variety of natural habitats such as soil and marine sediments, from different plant and animal materials as well as from human patients. Moreover, representatives of the genus Nocardiopsis participate actively in biopolymer degradation. This is the first complete genome sequence in the family Nocardiopsaceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 6,543,312 bp long genome consist of a 5.77 Mbp chromosome and a 0.78 Mbp plasmid and with its 5,570 protein-coding and 77 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)325-336
Number of pages12
JournalStandards in Genomic Sciences
Volume3
Issue number3
DOIs
StatePublished - 2010

Keywords

  • Actinomycetoma
  • Aerobic
  • Cholangitis
  • Conjunctivitis
  • GEBA
  • Gram-positive
  • Mesophile
  • Mycelium
  • Nocardiopsaceae
  • Non alkaliphilic
  • Pathogen
  • Zig-zag-shaped

ASJC Scopus subject areas

  • Genetics

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    Sun, H., Lapidus, A., Nolan, M., Lucas, S., del Rio, T. G., Tice, H., Cheng, J. F., Tapia, R., Han, C., Goodwin, L., Pitluck, S., Pagani, I., Ivanova, N., Mavromatis, K., Mikhailova, N., Pati, A., Chen, A., Palaniappan, K., Land, M., ... Klenk, H. P. (2010). Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509 T). Standards in Genomic Sciences, 3(3), 325-336. https://doi.org/10.4056/sigs.1363462