Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509 T)

Hui Sun, Alla Lapidus, Matt Nolan, Susan Lucas, Tijana Glavina del Rio, Hope Tice, Jan Fang Cheng, Roxane Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren HauserYun Juan Chang, Cynthia D. Jeffries, Olivier Duplex Ngatchou Djao, Manfred Rohde, Johannes Sikorski, Markus Göker, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk

Research output: Contribution to journalArticle

25 Citations (Scopus)

Abstract

Nocardiopsis dassonvillei (Brocq-Rousseau 1904) Meyer 1976 is the type species of the genus Nocardiopsis, which in turn is the type genus of the family Nocardiopsaceae. This species is of interest because of its ecological versatility. Members of N. dassonvillei have been isolated from a large variety of natural habitats such as soil and marine sediments, from different plant and animal materials as well as from human patients. Moreover, representatives of the genus Nocardiopsis participate actively in biopolymer degradation. This is the first complete genome sequence in the family Nocardiopsaceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 6,543,312 bp long genome consist of a 5.77 Mbp chromosome and a 0.78 Mbp plasmid and with its 5,570 protein-coding and 77 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)325-336
Number of pages12
JournalStandards in Genomic Sciences
Volume3
Issue number3
DOIs
StatePublished - 2010

Fingerprint

Genome
Encyclopedias
Geologic Sediments
Biopolymers
Archaea
Ecosystem
Plasmids
Soil
Chromosomes
RNA
Bacteria
Genes
Proteins

Keywords

  • Actinomycetoma
  • Aerobic
  • Cholangitis
  • Conjunctivitis
  • GEBA
  • Gram-positive
  • Mesophile
  • Mycelium
  • Nocardiopsaceae
  • Non alkaliphilic
  • Pathogen
  • Zig-zag-shaped

ASJC Scopus subject areas

  • Genetics

Cite this

Sun, H., Lapidus, A., Nolan, M., Lucas, S., del Rio, T. G., Tice, H., ... Klenk, H. P. (2010). Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509 T). Standards in Genomic Sciences, 3(3), 325-336. https://doi.org/10.4056/sigs.1363462

Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509 T). / Sun, Hui; Lapidus, Alla; Nolan, Matt; Lucas, Susan; del Rio, Tijana Glavina; Tice, Hope; Cheng, Jan Fang; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Pagani, Ioanna; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Djao, Olivier Duplex Ngatchou; Rohde, Manfred; Sikorski, Johannes; Göker, Markus; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

In: Standards in Genomic Sciences, Vol. 3, No. 3, 2010, p. 325-336.

Research output: Contribution to journalArticle

Sun, H, Lapidus, A, Nolan, M, Lucas, S, del Rio, TG, Tice, H, Cheng, JF, Tapia, R, Han, C, Goodwin, L, Pitluck, S, Pagani, I, Ivanova, N, Mavromatis, K, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Djao, ODN, Rohde, M, Sikorski, J, Göker, M, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2010, 'Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509 T)', Standards in Genomic Sciences, vol. 3, no. 3, pp. 325-336. https://doi.org/10.4056/sigs.1363462
Sun, Hui ; Lapidus, Alla ; Nolan, Matt ; Lucas, Susan ; del Rio, Tijana Glavina ; Tice, Hope ; Cheng, Jan Fang ; Tapia, Roxane ; Han, Cliff ; Goodwin, Lynne ; Pitluck, Sam ; Pagani, Ioanna ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Mikhailova, Natalia ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Djao, Olivier Duplex Ngatchou ; Rohde, Manfred ; Sikorski, Johannes ; Göker, Markus ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509 T). In: Standards in Genomic Sciences. 2010 ; Vol. 3, No. 3. pp. 325-336.
@article{891a7d4135f3417db47cca9a668d9392,
title = "Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509 T)",
abstract = "Nocardiopsis dassonvillei (Brocq-Rousseau 1904) Meyer 1976 is the type species of the genus Nocardiopsis, which in turn is the type genus of the family Nocardiopsaceae. This species is of interest because of its ecological versatility. Members of N. dassonvillei have been isolated from a large variety of natural habitats such as soil and marine sediments, from different plant and animal materials as well as from human patients. Moreover, representatives of the genus Nocardiopsis participate actively in biopolymer degradation. This is the first complete genome sequence in the family Nocardiopsaceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 6,543,312 bp long genome consist of a 5.77 Mbp chromosome and a 0.78 Mbp plasmid and with its 5,570 protein-coding and 77 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Actinomycetoma, Aerobic, Cholangitis, Conjunctivitis, GEBA, Gram-positive, Mesophile, Mycelium, Nocardiopsaceae, Non alkaliphilic, Pathogen, Zig-zag-shaped",
author = "Hui Sun and Alla Lapidus and Matt Nolan and Susan Lucas and {del Rio}, {Tijana Glavina} and Hope Tice and Cheng, {Jan Fang} and Roxane Tapia and Cliff Han and Lynne Goodwin and Sam Pitluck and Ioanna Pagani and Natalia Ivanova and Konstantinos Mavromatis and Natalia Mikhailova and Amrita Pati and Amy Chen and Krishna Palaniappan and Miriam Land and Loren Hauser and Chang, {Yun Juan} and Jeffries, {Cynthia D.} and Djao, {Olivier Duplex Ngatchou} and Manfred Rohde and Johannes Sikorski and Markus G{\"o}ker and Tanja Woyke and James Bristow and Eisen, {Jonathan A} and Victor Markowitz and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter}",
year = "2010",
doi = "10.4056/sigs.1363462",
language = "English (US)",
volume = "3",
pages = "325--336",
journal = "Environmental Microbiomes",
issn = "1944-3277",
publisher = "BioMed Central Ltd.",
number = "3",

}

TY - JOUR

T1 - Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509 T)

AU - Sun, Hui

AU - Lapidus, Alla

AU - Nolan, Matt

AU - Lucas, Susan

AU - del Rio, Tijana Glavina

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Tapia, Roxane

AU - Han, Cliff

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Pagani, Ioanna

AU - Ivanova, Natalia

AU - Mavromatis, Konstantinos

AU - Mikhailova, Natalia

AU - Pati, Amrita

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Djao, Olivier Duplex Ngatchou

AU - Rohde, Manfred

AU - Sikorski, Johannes

AU - Göker, Markus

AU - Woyke, Tanja

AU - Bristow, James

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

PY - 2010

Y1 - 2010

N2 - Nocardiopsis dassonvillei (Brocq-Rousseau 1904) Meyer 1976 is the type species of the genus Nocardiopsis, which in turn is the type genus of the family Nocardiopsaceae. This species is of interest because of its ecological versatility. Members of N. dassonvillei have been isolated from a large variety of natural habitats such as soil and marine sediments, from different plant and animal materials as well as from human patients. Moreover, representatives of the genus Nocardiopsis participate actively in biopolymer degradation. This is the first complete genome sequence in the family Nocardiopsaceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 6,543,312 bp long genome consist of a 5.77 Mbp chromosome and a 0.78 Mbp plasmid and with its 5,570 protein-coding and 77 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Nocardiopsis dassonvillei (Brocq-Rousseau 1904) Meyer 1976 is the type species of the genus Nocardiopsis, which in turn is the type genus of the family Nocardiopsaceae. This species is of interest because of its ecological versatility. Members of N. dassonvillei have been isolated from a large variety of natural habitats such as soil and marine sediments, from different plant and animal materials as well as from human patients. Moreover, representatives of the genus Nocardiopsis participate actively in biopolymer degradation. This is the first complete genome sequence in the family Nocardiopsaceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 6,543,312 bp long genome consist of a 5.77 Mbp chromosome and a 0.78 Mbp plasmid and with its 5,570 protein-coding and 77 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Actinomycetoma

KW - Aerobic

KW - Cholangitis

KW - Conjunctivitis

KW - GEBA

KW - Gram-positive

KW - Mesophile

KW - Mycelium

KW - Nocardiopsaceae

KW - Non alkaliphilic

KW - Pathogen

KW - Zig-zag-shaped

UR - http://www.scopus.com/inward/record.url?scp=80052253949&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=80052253949&partnerID=8YFLogxK

U2 - 10.4056/sigs.1363462

DO - 10.4056/sigs.1363462

M3 - Article

C2 - 21304737

AN - SCOPUS:80052253949

VL - 3

SP - 325

EP - 336

JO - Environmental Microbiomes

JF - Environmental Microbiomes

SN - 1944-3277

IS - 3

ER -