Complete genome sequence of Nakamurella multipartita type strain (Y-104 T)

Hope Tice; Shanmugam Mayilraj; David Sims; Alla Lapidus; Matt Nolan; Susan Lucas; Tijana Glavina Del Rio; Alex Copeland; Jan Fang Cheng; Linda Meincke; David Bruce; Lynne Goodwin; Sam Pitluck; Natalia Ivanova; Konstantinos Mavromatis; Galina Ovchinnikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun Juan Chang; Cynthia D. Jeffries; John C. Detter; Thomas Brettin; Manfred Rohde; Markus Göker; Jim Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C. Kyrpides; Hans Peter Klenk; Feng Chen

doi:10.4056/sigs.721316

Complete genome sequence of Nakamurella multipartita type strain (Y-104 ^T)

Hope Tice, Shanmugam Mayilraj, David Sims, Alla Lapidus, Matt Nolan, Susan Lucas, Tijana Glavina Del Rio, Alex Copeland, Jan Fang Cheng, Linda Meincke, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam LandLoren Hauser, Yun Juan Chang, Cynthia D. Jeffries, John C. Detter, Thomas Brettin, Manfred Rohde, Markus Göker, Jim Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Feng Chen

Medical Microbiology and Immunology

Research output: Contribution to journal › Article › peer-review

32 Scopus citations

Abstract

Nakamurella multipartita (Yoshimi et al. 1996) Tao et al. 2004 is the type species of the mo-nospecific genus Nakamurella in the actinobacterial suborder Frankineae. The nonmotile, coccus-shaped strain was isolated from activated sludge acclimated with sugar-containing synthetic wastewater, and is capable of accumulating large amounts of polysaccharides in its cells. Here we describe the features of the organism, together with the complete genome se-quence and annotation. This is the first complete genome sequence of a member of the family Nakamurellaceae. The 6,060,298 bp long single replicon genome with its 5415 protein-coding and 56 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original language	English (US)
Pages (from-to)	168-175
Number of pages	8
Journal	Standards in Genomic Sciences
Volume	2
Issue number	2
DOIs	https://doi.org/10.4056/sigs.721316
State	Published - 2010

Keywords

(H )
Frankineae
GEBA
Gram-positive
Microsphaeraceae
MK-8
Nonmotile
Polysaccharide-accumulating
Septa-forming

ASJC Scopus subject areas

Genetics

Access to Document

10.4056/sigs.721316

Cite this

Tice, H., Mayilraj, S., Sims, D., Lapidus, A., Nolan, M., Lucas, S., Glavina Del Rio, T., Copeland, A., Cheng, J. F., Meincke, L., Bruce, D., Goodwin, L., Pitluck, S., Ivanova, N., Mavromatis, K., Ovchinnikova, G., Pati, A., Chen, A., Palaniappan, K., ... Chen, F. (2010). Complete genome sequence of Nakamurella multipartita type strain (Y-104 ^T). Standards in Genomic Sciences, 2(2), 168-175. https://doi.org/10.4056/sigs.721316

Complete genome sequence of Nakamurella multipartita type strain (Y-104 ^T). / Tice, Hope; Mayilraj, Shanmugam; Sims, David; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Glavina Del Rio, Tijana; Copeland, Alex; Cheng, Jan Fang; Meincke, Linda; Bruce, David; Goodwin, Lynne; Pitluck, Sam; Ivanova, Natalia; Mavromatis, Konstantinos; Ovchinnikova, Galina; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Detter, John C.; Brettin, Thomas; Rohde, Manfred; Göker, Markus; Bristow, Jim; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Chen, Feng.

In: Standards in Genomic Sciences, Vol. 2, No. 2, 2010, p. 168-175.

Research output: Contribution to journal › Article › peer-review

Tice, H, Mayilraj, S, Sims, D, Lapidus, A, Nolan, M, Lucas, S, Glavina Del Rio, T, Copeland, A, Cheng, JF, Meincke, L, Bruce, D, Goodwin, L, Pitluck, S, Ivanova, N, Mavromatis, K, Ovchinnikova, G, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Detter, JC, Brettin, T, Rohde, M, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Chen, F 2010, 'Complete genome sequence of Nakamurella multipartita type strain (Y-104 ^T)', Standards in Genomic Sciences, vol. 2, no. 2, pp. 168-175. https://doi.org/10.4056/sigs.721316

Tice, Hope ; Mayilraj, Shanmugam ; Sims, David ; Lapidus, Alla ; Nolan, Matt ; Lucas, Susan ; Glavina Del Rio, Tijana ; Copeland, Alex ; Cheng, Jan Fang ; Meincke, Linda ; Bruce, David ; Goodwin, Lynne ; Pitluck, Sam ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Ovchinnikova, Galina ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Detter, John C. ; Brettin, Thomas ; Rohde, Manfred ; Göker, Markus ; Bristow, Jim ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Chen, Feng. / Complete genome sequence of Nakamurella multipartita type strain (Y-104 ^T). In: Standards in Genomic Sciences. 2010 ; Vol. 2, No. 2. pp. 168-175.

@article{d257ecd365274bb68fc67ec128466169,

title = "Complete genome sequence of Nakamurella multipartita type strain (Y-104 T)",

abstract = "Nakamurella multipartita (Yoshimi et al. 1996) Tao et al. 2004 is the type species of the mo-nospecific genus Nakamurella in the actinobacterial suborder Frankineae. The nonmotile, coccus-shaped strain was isolated from activated sludge acclimated with sugar-containing synthetic wastewater, and is capable of accumulating large amounts of polysaccharides in its cells. Here we describe the features of the organism, together with the complete genome se-quence and annotation. This is the first complete genome sequence of a member of the family Nakamurellaceae. The 6,060,298 bp long single replicon genome with its 5415 protein-coding and 56 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.",

keywords = "(H ), Frankineae, GEBA, Gram-positive, Microsphaeraceae, MK-8, Nonmotile, Polysaccharide-accumulating, Septa-forming",

author = "Hope Tice and Shanmugam Mayilraj and David Sims and Alla Lapidus and Matt Nolan and Susan Lucas and {Glavina Del Rio}, Tijana and Alex Copeland and Cheng, {Jan Fang} and Linda Meincke and David Bruce and Lynne Goodwin and Sam Pitluck and Natalia Ivanova and Konstantinos Mavromatis and Galina Ovchinnikova and Amrita Pati and Amy Chen and Krishna Palaniappan and Miriam Land and Loren Hauser and Chang, {Yun Juan} and Jeffries, {Cynthia D.} and Detter, {John C.} and Thomas Brettin and Manfred Rohde and Markus G{\"o}ker and Jim Bristow and Eisen, {Jonathan A} and Victor Markowitz and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter} and Feng Chen",

year = "2010",

doi = "10.4056/sigs.721316",

language = "English (US)",

volume = "2",

pages = "168--175",

journal = "Environmental Microbiomes",

issn = "1944-3277",

publisher = "BioMed Central Ltd.",

number = "2",

}

TY - JOUR

T1 - Complete genome sequence of Nakamurella multipartita type strain (Y-104 T)

AU - Tice, Hope

AU - Mayilraj, Shanmugam

AU - Sims, David

AU - Lapidus, Alla

AU - Nolan, Matt

AU - Lucas, Susan

AU - Glavina Del Rio, Tijana

AU - Copeland, Alex

AU - Cheng, Jan Fang

AU - Meincke, Linda

AU - Bruce, David

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Ivanova, Natalia

AU - Mavromatis, Konstantinos

AU - Ovchinnikova, Galina

AU - Pati, Amrita

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Detter, John C.

AU - Brettin, Thomas

AU - Rohde, Manfred

AU - Göker, Markus

AU - Bristow, Jim

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

AU - Chen, Feng

PY - 2010

Y1 - 2010

N2 - Nakamurella multipartita (Yoshimi et al. 1996) Tao et al. 2004 is the type species of the mo-nospecific genus Nakamurella in the actinobacterial suborder Frankineae. The nonmotile, coccus-shaped strain was isolated from activated sludge acclimated with sugar-containing synthetic wastewater, and is capable of accumulating large amounts of polysaccharides in its cells. Here we describe the features of the organism, together with the complete genome se-quence and annotation. This is the first complete genome sequence of a member of the family Nakamurellaceae. The 6,060,298 bp long single replicon genome with its 5415 protein-coding and 56 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Nakamurella multipartita (Yoshimi et al. 1996) Tao et al. 2004 is the type species of the mo-nospecific genus Nakamurella in the actinobacterial suborder Frankineae. The nonmotile, coccus-shaped strain was isolated from activated sludge acclimated with sugar-containing synthetic wastewater, and is capable of accumulating large amounts of polysaccharides in its cells. Here we describe the features of the organism, together with the complete genome se-quence and annotation. This is the first complete genome sequence of a member of the family Nakamurellaceae. The 6,060,298 bp long single replicon genome with its 5415 protein-coding and 56 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - (H )

KW - Frankineae

KW - GEBA

KW - Gram-positive

KW - Microsphaeraceae

KW - MK-8

KW - Nonmotile

KW - Polysaccharide-accumulating

KW - Septa-forming

UR - http://www.scopus.com/inward/record.url?scp=80053456933&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=80053456933&partnerID=8YFLogxK

U2 - 10.4056/sigs.721316

DO - 10.4056/sigs.721316

M3 - Article

C2 - 21304699

AN - SCOPUS:80053456933

VL - 2

SP - 168

EP - 175

JO - Environmental Microbiomes

JF - Environmental Microbiomes

SN - 1944-3277

IS - 2

ER -