Complete genome sequence of marivirga tractuosa type strain (H-43 T)

Ioanna Pagani, Olga Chertkov, Alla Lapidus, Susan Lucas, Tijana Glavina Del Rio, Hope Tice, Alex Copeland, Jan Fang Cheng, Matt Nolan, Elizabeth Saunders, Sam Pitluck, Brittany Held, Lynne Goodwin, Konstantinos Liolios, Galina Ovchinikova, Natalia Ivanova, Konstantinos Mavromatis, Amrita Pati, Amy Chen, Krishna PalaniappanMiriam Land, Loren Hauser, Cynthia D. Jeffries, John C. Detter, Cliff Han, Roxanne Tapia, Olivier D. Ngatchou-Djao, Manfred Rohde, Markus Göker, Stefan Spring, Johannes Sikorski, Tanja Woyke, Jim Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Hans Peter Klenk, Nikos C. Kyrpides

Research output: Contribution to journalArticle

11 Citations (Scopus)

Abstract

Marivirga tractuosa (Lewin 1969) Nedashkovskaya et al. 2010 is the type species of the genus Marivirga, which belongs to the family Flammeovirgaceae. Members of this genus are of in-terest because of their gliding motility. The species is of interest because representative strains show resistance to several antibiotics, including gentamicin, kanamycin, neomycin, polymix-in and streptomycin. This is the first complete genome sequence of a member of the family Flammeovirgaceae. Here we describe the features of this organism, together with the com-plete genome sequence and annotation. The 4,511,574 bp long chromosome and the 4,916 bp plasmid with their 3,808 protein-coding and 49 RNA genes are a part of the Genomic En-cyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)154-162
Number of pages9
JournalStandards in Genomic Sciences
Volume4
Issue number2
DOIs
StatePublished - 2011

Fingerprint

Genome
Chromosomes, Human, Pair 4
Kanamycin
Neomycin
Archaea
Streptomycin
Gentamicins
Plasmids
RNA
Anti-Bacterial Agents
Bacteria
Genes
Proteins

Keywords

  • Chemoorganotrophic
  • Flammeovirgaceae
  • GEBA
  • Gram-negative
  • Mesophilic
  • Motile by gliding
  • Non-sporeforming
  • Slender and flexible rod-shaped
  • Strictly aerobic

ASJC Scopus subject areas

  • Genetics

Cite this

Pagani, I., Chertkov, O., Lapidus, A., Lucas, S., Rio, T. G. D., Tice, H., ... Kyrpides, N. C. (2011). Complete genome sequence of marivirga tractuosa type strain (H-43 T). Standards in Genomic Sciences, 4(2), 154-162. https://doi.org/10.4056/sigs.1623941

Complete genome sequence of marivirga tractuosa type strain (H-43 T). / Pagani, Ioanna; Chertkov, Olga; Lapidus, Alla; Lucas, Susan; Rio, Tijana Glavina Del; Tice, Hope; Copeland, Alex; Cheng, Jan Fang; Nolan, Matt; Saunders, Elizabeth; Pitluck, Sam; Held, Brittany; Goodwin, Lynne; Liolios, Konstantinos; Ovchinikova, Galina; Ivanova, Natalia; Mavromatis, Konstantinos; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Jeffries, Cynthia D.; Detter, John C.; Han, Cliff; Tapia, Roxanne; Ngatchou-Djao, Olivier D.; Rohde, Manfred; Göker, Markus; Spring, Stefan; Sikorski, Johannes; Woyke, Tanja; Bristow, Jim; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans Peter; Kyrpides, Nikos C.

In: Standards in Genomic Sciences, Vol. 4, No. 2, 2011, p. 154-162.

Research output: Contribution to journalArticle

Pagani, I, Chertkov, O, Lapidus, A, Lucas, S, Rio, TGD, Tice, H, Copeland, A, Cheng, JF, Nolan, M, Saunders, E, Pitluck, S, Held, B, Goodwin, L, Liolios, K, Ovchinikova, G, Ivanova, N, Mavromatis, K, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Jeffries, CD, Detter, JC, Han, C, Tapia, R, Ngatchou-Djao, OD, Rohde, M, Göker, M, Spring, S, Sikorski, J, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Klenk, HP & Kyrpides, NC 2011, 'Complete genome sequence of marivirga tractuosa type strain (H-43 T)', Standards in Genomic Sciences, vol. 4, no. 2, pp. 154-162. https://doi.org/10.4056/sigs.1623941
Pagani, Ioanna ; Chertkov, Olga ; Lapidus, Alla ; Lucas, Susan ; Rio, Tijana Glavina Del ; Tice, Hope ; Copeland, Alex ; Cheng, Jan Fang ; Nolan, Matt ; Saunders, Elizabeth ; Pitluck, Sam ; Held, Brittany ; Goodwin, Lynne ; Liolios, Konstantinos ; Ovchinikova, Galina ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Jeffries, Cynthia D. ; Detter, John C. ; Han, Cliff ; Tapia, Roxanne ; Ngatchou-Djao, Olivier D. ; Rohde, Manfred ; Göker, Markus ; Spring, Stefan ; Sikorski, Johannes ; Woyke, Tanja ; Bristow, Jim ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Klenk, Hans Peter ; Kyrpides, Nikos C. / Complete genome sequence of marivirga tractuosa type strain (H-43 T). In: Standards in Genomic Sciences. 2011 ; Vol. 4, No. 2. pp. 154-162.
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AU - Tice, Hope

AU - Copeland, Alex

AU - Cheng, Jan Fang

AU - Nolan, Matt

AU - Saunders, Elizabeth

AU - Pitluck, Sam

AU - Held, Brittany

AU - Goodwin, Lynne

AU - Liolios, Konstantinos

AU - Ovchinikova, Galina

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AU - Ngatchou-Djao, Olivier D.

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AU - Göker, Markus

AU - Spring, Stefan

AU - Sikorski, Johannes

AU - Woyke, Tanja

AU - Bristow, Jim

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Klenk, Hans Peter

AU - Kyrpides, Nikos C.

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