Complete genome sequence of leadbetterella byssophila type strain (4M15 T)

Birte Abt, Hazuki Teshima, Susan Lucas, Alla Lapidus, Tijana Glavina del Rio, Matt Nolan, Hope Tice, Jan Fang Cheng, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Amrita Pati, Roxane Tapia, Cliff Han, Lynne Goodwin, Amy Chen, Krishna Palaniappan, Miriam LandLoren Hauser, Yun Juan Chang, Cynthia D. Jeffries, Manfred Rohde, Markus Göker, Brian J. Tindall, John C. Detter, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Hans Peter Klenk, Nikos C. Kyrpides

Research output: Contribution to journalArticle

14 Citations (Scopus)

Abstract

Lead betterella byssophila Weon et al. 2005 is the type species of the genus Leadbetterella of the family Cytophagaceae in the phylum Bacteroidetes. Members of the phylum Bacteroidetes are widely distributed in nature, especially in aquatic environments. They are of special interest for their ability to degrade complex biopolymers. L. byssophila occupies a rather isolated position in the tree of life and is characterized by its ability to hydrolyze starch and gelatine, but not agar, cellulose or chitin. Here we describe the features of this organism, together with the complete genome sequence, and annotation. L. byssophila is already the 16th member of the family Cytophagaceae whose genome has been sequenced. The 4,059,653 bp long single replicon genome with its 3,613 protein-coding and 53 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)2-12
Number of pages11
JournalStandards in Genomic Sciences
Volume4
Issue number1
DOIs
StatePublished - 2011

Fingerprint

Cytophagaceae
Bacteroidetes
Aptitude
Genome
Encyclopedias
Replicon
Biopolymers
Chitin
Archaea
Cellulose
Starch
Agar
RNA
Bacteria
Genes
Proteins

Keywords

  • Aerobic
  • Cy-tophagaceae
  • Flexirubin
  • GEBA
  • Gram-negative
  • Mesophile
  • Non-motile
  • Non-sporulating

ASJC Scopus subject areas

  • Genetics

Cite this

Abt, B., Teshima, H., Lucas, S., Lapidus, A., del Rio, T. G., Nolan, M., ... Kyrpides, N. C. (2011). Complete genome sequence of leadbetterella byssophila type strain (4M15 T). Standards in Genomic Sciences, 4(1), 2-12. https://doi.org/10.4056/sigs.1413518

Complete genome sequence of leadbetterella byssophila type strain (4M15 T). / Abt, Birte; Teshima, Hazuki; Lucas, Susan; Lapidus, Alla; del Rio, Tijana Glavina; Nolan, Matt; Tice, Hope; Cheng, Jan Fang; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mavromatis, Konstantinos; Pati, Amrita; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Rohde, Manfred; Göker, Markus; Tindall, Brian J.; Detter, John C.; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans Peter; Kyrpides, Nikos C.

In: Standards in Genomic Sciences, Vol. 4, No. 1, 2011, p. 2-12.

Research output: Contribution to journalArticle

Abt, B, Teshima, H, Lucas, S, Lapidus, A, del Rio, TG, Nolan, M, Tice, H, Cheng, JF, Pitluck, S, Liolios, K, Pagani, I, Ivanova, N, Mavromatis, K, Pati, A, Tapia, R, Han, C, Goodwin, L, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Rohde, M, Göker, M, Tindall, BJ, Detter, JC, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Klenk, HP & Kyrpides, NC 2011, 'Complete genome sequence of leadbetterella byssophila type strain (4M15 T)', Standards in Genomic Sciences, vol. 4, no. 1, pp. 2-12. https://doi.org/10.4056/sigs.1413518
Abt, Birte ; Teshima, Hazuki ; Lucas, Susan ; Lapidus, Alla ; del Rio, Tijana Glavina ; Nolan, Matt ; Tice, Hope ; Cheng, Jan Fang ; Pitluck, Sam ; Liolios, Konstantinos ; Pagani, Ioanna ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Pati, Amrita ; Tapia, Roxane ; Han, Cliff ; Goodwin, Lynne ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Rohde, Manfred ; Göker, Markus ; Tindall, Brian J. ; Detter, John C. ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Klenk, Hans Peter ; Kyrpides, Nikos C. / Complete genome sequence of leadbetterella byssophila type strain (4M15 T). In: Standards in Genomic Sciences. 2011 ; Vol. 4, No. 1. pp. 2-12.
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