Complete genome sequence of Kytococcus sedentarius type strain (541 T)

David Sims, Thomas Brettin, John C. Detter, Cliff Han, Alla Lapidus, Alex Copeland, Tijana Glavina del Rio, Matt Nolan, Feng Chen, Susan Lucas, Hope Tice, Jan Fang Cheng, David Bruce, Lynne Goodwin, Sam Pitluck, Galina Ovchinnikova, Amrita Pati, Natalia Ivanova, Konstantinos Mavromatis, Amy ChenKrishna Palaniappan, Patrik D'haeseleer, Patrick Chain, Jim Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Susanne Schneider, Markus Göker, Rüdiger Pukall, Nikos C. Kyrpides, Hans Peter Klenk

Research output: Contribution to journalArticle

91 Citations (Scopus)

Abstract

Kytococcus sedentarius (ZoBell and Upham 1944) Stackebrandt et al. 1995 is the type strain of the species, and is of phylogenetic interest because of its location in the Dermacoccaceae, a poorly studied family within the actinobacterial suborder Micrococcineae. K. sedentarius is known for the production of oligoketide antibiotics as well as for its role as an opportunistic pathogen causing valve endocarditis, hemorrhagic pneumonia, and pitted keratolysis. It is strictly aerobic and can only grow when several amino acids are provided in the medium. The strain described in this report is a free-living, nonmotile, Gram-positive bacterium, originally isolated from a marine environment. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of a member of the family Dermacoccaceae and the 2,785,024 bp long single replicon genome with its 2639 protein-coding and 64 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)12-20
Number of pages9
JournalStandards in Genomic Sciences
Volume1
Issue number1
DOIs
StatePublished - 2009

Fingerprint

Genome
Encyclopedias
Replicon
Archaea
Gram-Positive Bacteria
Endocarditis
Pneumonia
RNA
Anti-Bacterial Agents
Bacteria
Amino Acids
Genes
Proteins

Keywords

  • Aerobic
  • Dermacocca-ceae
  • Free-living
  • Marine
  • Mesophile
  • Opportunistic pathogenic

ASJC Scopus subject areas

  • Genetics

Cite this

Sims, D., Brettin, T., Detter, J. C., Han, C., Lapidus, A., Copeland, A., ... Klenk, H. P. (2009). Complete genome sequence of Kytococcus sedentarius type strain (541 T). Standards in Genomic Sciences, 1(1), 12-20. https://doi.org/10.4056/sigs.761

Complete genome sequence of Kytococcus sedentarius type strain (541 T). / Sims, David; Brettin, Thomas; Detter, John C.; Han, Cliff; Lapidus, Alla; Copeland, Alex; del Rio, Tijana Glavina; Nolan, Matt; Chen, Feng; Lucas, Susan; Tice, Hope; Cheng, Jan Fang; Bruce, David; Goodwin, Lynne; Pitluck, Sam; Ovchinnikova, Galina; Pati, Amrita; Ivanova, Natalia; Mavromatis, Konstantinos; Chen, Amy; Palaniappan, Krishna; D'haeseleer, Patrik; Chain, Patrick; Bristow, Jim; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Schneider, Susanne; Göker, Markus; Pukall, Rüdiger; Kyrpides, Nikos C.; Klenk, Hans Peter.

In: Standards in Genomic Sciences, Vol. 1, No. 1, 2009, p. 12-20.

Research output: Contribution to journalArticle

Sims, D, Brettin, T, Detter, JC, Han, C, Lapidus, A, Copeland, A, del Rio, TG, Nolan, M, Chen, F, Lucas, S, Tice, H, Cheng, JF, Bruce, D, Goodwin, L, Pitluck, S, Ovchinnikova, G, Pati, A, Ivanova, N, Mavromatis, K, Chen, A, Palaniappan, K, D'haeseleer, P, Chain, P, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Schneider, S, Göker, M, Pukall, R, Kyrpides, NC & Klenk, HP 2009, 'Complete genome sequence of Kytococcus sedentarius type strain (541 T)', Standards in Genomic Sciences, vol. 1, no. 1, pp. 12-20. https://doi.org/10.4056/sigs.761
Sims, David ; Brettin, Thomas ; Detter, John C. ; Han, Cliff ; Lapidus, Alla ; Copeland, Alex ; del Rio, Tijana Glavina ; Nolan, Matt ; Chen, Feng ; Lucas, Susan ; Tice, Hope ; Cheng, Jan Fang ; Bruce, David ; Goodwin, Lynne ; Pitluck, Sam ; Ovchinnikova, Galina ; Pati, Amrita ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Chen, Amy ; Palaniappan, Krishna ; D'haeseleer, Patrik ; Chain, Patrick ; Bristow, Jim ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Schneider, Susanne ; Göker, Markus ; Pukall, Rüdiger ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Complete genome sequence of Kytococcus sedentarius type strain (541 T). In: Standards in Genomic Sciences. 2009 ; Vol. 1, No. 1. pp. 12-20.
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AU - Sims, David

AU - Brettin, Thomas

AU - Detter, John C.

AU - Han, Cliff

AU - Lapidus, Alla

AU - Copeland, Alex

AU - del Rio, Tijana Glavina

AU - Nolan, Matt

AU - Chen, Feng

AU - Lucas, Susan

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Bruce, David

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Ovchinnikova, Galina

AU - Pati, Amrita

AU - Ivanova, Natalia

AU - Mavromatis, Konstantinos

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - D'haeseleer, Patrik

AU - Chain, Patrick

AU - Bristow, Jim

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Schneider, Susanne

AU - Göker, Markus

AU - Pukall, Rüdiger

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

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N2 - Kytococcus sedentarius (ZoBell and Upham 1944) Stackebrandt et al. 1995 is the type strain of the species, and is of phylogenetic interest because of its location in the Dermacoccaceae, a poorly studied family within the actinobacterial suborder Micrococcineae. K. sedentarius is known for the production of oligoketide antibiotics as well as for its role as an opportunistic pathogen causing valve endocarditis, hemorrhagic pneumonia, and pitted keratolysis. It is strictly aerobic and can only grow when several amino acids are provided in the medium. The strain described in this report is a free-living, nonmotile, Gram-positive bacterium, originally isolated from a marine environment. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of a member of the family Dermacoccaceae and the 2,785,024 bp long single replicon genome with its 2639 protein-coding and 64 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

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KW - Aerobic

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KW - Mesophile

KW - Opportunistic pathogenic

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