Complete genome sequence of Haloterrigena turkmenica type strain (4k T)

Elisabeth Saunders, Brian J. Tindall, Regine Fähnrich, Alla Lapidus, Alex Copeland, Tijana Glavina del Rio, Susan Lucas, Feng Chen, Hope Tice, Jan Fang Cheng, Cliff Han, John C. Detter, David Bruce, Lynne Goodwin, Patrick Chain, Sam Pitluck, Amrita Pati, Natalia Ivanova, Konstantinos Mavromatis, Amy ChenKrishna Palaniappan, Miriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. Jeffries, Thomas Brettin, Manfred Rohde, Markus Göker, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Hans Peter Klenk, Nikos C. Kyrpides

Research output: Contribution to journalArticle

25 Citations (Scopus)

Abstract

Haloterrigena turkmenica (Zvyagintseva and Tarasov 1987) Ventosa et al. 1999, comb. nov. is the type species of the genus Haloterrigena in the euryarchaeal family Halobacteriaceae. It is of phylogenetic interest because of the yet unclear position of the genera Haloterrigena and Natrinema within the Halobacteriaceae, which created some taxonomic problems historically. H. turkmenica, was isolated from sulfate saline soil in Turkmenistan, is a relatively fast growing, chemoorganotrophic, carotenoid-containing, extreme halophile, requiring at least 2 M NaCl for growth. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Haloterrigena, but the eighth genome sequence from a member of the family Halobacteriaceae. The 5,440,782 bp genome (including six plasmids) with its 5,287 protein-coding and 63 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)107-116
Number of pages10
JournalStandards in Genomic Sciences
Volume2
Issue number1
DOIs
StatePublished - 2010

Fingerprint

Halobacteriaceae
Genome
Halobacteriales
Turkmenistan
Encyclopedias
Comb and Wattles
Archaea
Carotenoids
Sulfates
Plasmids
Soil
RNA
Bacteria
Growth
Genes
Proteins

Keywords

  • Aerobic
  • Carotenoidscontaining
  • Extreme halophile
  • Free-living
  • GEBA
  • Halobacteriaceae
  • Non-pathogenic
  • Thermophile

ASJC Scopus subject areas

  • Genetics

Cite this

Saunders, E., Tindall, B. J., Fähnrich, R., Lapidus, A., Copeland, A., del Rio, T. G., ... Kyrpides, N. C. (2010). Complete genome sequence of Haloterrigena turkmenica type strain (4k T). Standards in Genomic Sciences, 2(1), 107-116. https://doi.org/10.4056/sigs.681272

Complete genome sequence of Haloterrigena turkmenica type strain (4k T). / Saunders, Elisabeth; Tindall, Brian J.; Fähnrich, Regine; Lapidus, Alla; Copeland, Alex; del Rio, Tijana Glavina; Lucas, Susan; Chen, Feng; Tice, Hope; Cheng, Jan Fang; Han, Cliff; Detter, John C.; Bruce, David; Goodwin, Lynne; Chain, Patrick; Pitluck, Sam; Pati, Amrita; Ivanova, Natalia; Mavromatis, Konstantinos; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Brettin, Thomas; Rohde, Manfred; Göker, Markus; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans Peter; Kyrpides, Nikos C.

In: Standards in Genomic Sciences, Vol. 2, No. 1, 2010, p. 107-116.

Research output: Contribution to journalArticle

Saunders, E, Tindall, BJ, Fähnrich, R, Lapidus, A, Copeland, A, del Rio, TG, Lucas, S, Chen, F, Tice, H, Cheng, JF, Han, C, Detter, JC, Bruce, D, Goodwin, L, Chain, P, Pitluck, S, Pati, A, Ivanova, N, Mavromatis, K, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Brettin, T, Rohde, M, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Klenk, HP & Kyrpides, NC 2010, 'Complete genome sequence of Haloterrigena turkmenica type strain (4k T)', Standards in Genomic Sciences, vol. 2, no. 1, pp. 107-116. https://doi.org/10.4056/sigs.681272
Saunders E, Tindall BJ, Fähnrich R, Lapidus A, Copeland A, del Rio TG et al. Complete genome sequence of Haloterrigena turkmenica type strain (4k T). Standards in Genomic Sciences. 2010;2(1):107-116. https://doi.org/10.4056/sigs.681272
Saunders, Elisabeth ; Tindall, Brian J. ; Fähnrich, Regine ; Lapidus, Alla ; Copeland, Alex ; del Rio, Tijana Glavina ; Lucas, Susan ; Chen, Feng ; Tice, Hope ; Cheng, Jan Fang ; Han, Cliff ; Detter, John C. ; Bruce, David ; Goodwin, Lynne ; Chain, Patrick ; Pitluck, Sam ; Pati, Amrita ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Brettin, Thomas ; Rohde, Manfred ; Göker, Markus ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Klenk, Hans Peter ; Kyrpides, Nikos C. / Complete genome sequence of Haloterrigena turkmenica type strain (4k T). In: Standards in Genomic Sciences. 2010 ; Vol. 2, No. 1. pp. 107-116.
@article{1c90358c55ab4adfad794cb7e1b29f21,
title = "Complete genome sequence of Haloterrigena turkmenica type strain (4k T)",
abstract = "Haloterrigena turkmenica (Zvyagintseva and Tarasov 1987) Ventosa et al. 1999, comb. nov. is the type species of the genus Haloterrigena in the euryarchaeal family Halobacteriaceae. It is of phylogenetic interest because of the yet unclear position of the genera Haloterrigena and Natrinema within the Halobacteriaceae, which created some taxonomic problems historically. H. turkmenica, was isolated from sulfate saline soil in Turkmenistan, is a relatively fast growing, chemoorganotrophic, carotenoid-containing, extreme halophile, requiring at least 2 M NaCl for growth. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Haloterrigena, but the eighth genome sequence from a member of the family Halobacteriaceae. The 5,440,782 bp genome (including six plasmids) with its 5,287 protein-coding and 63 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Aerobic, Carotenoidscontaining, Extreme halophile, Free-living, GEBA, Halobacteriaceae, Non-pathogenic, Thermophile",
author = "Elisabeth Saunders and Tindall, {Brian J.} and Regine F{\"a}hnrich and Alla Lapidus and Alex Copeland and {del Rio}, {Tijana Glavina} and Susan Lucas and Feng Chen and Hope Tice and Cheng, {Jan Fang} and Cliff Han and Detter, {John C.} and David Bruce and Lynne Goodwin and Patrick Chain and Sam Pitluck and Amrita Pati and Natalia Ivanova and Konstantinos Mavromatis and Amy Chen and Krishna Palaniappan and Miriam Land and Loren Hauser and Chang, {Yun Juan} and Jeffries, {Cynthia D.} and Thomas Brettin and Manfred Rohde and Markus G{\"o}ker and James Bristow and Eisen, {Jonathan A} and Victor Markowitz and Philip Hugenholtz and Klenk, {Hans Peter} and Kyrpides, {Nikos C.}",
year = "2010",
doi = "10.4056/sigs.681272",
language = "English (US)",
volume = "2",
pages = "107--116",
journal = "Environmental Microbiomes",
issn = "1944-3277",
publisher = "BioMed Central Ltd.",
number = "1",

}

TY - JOUR

T1 - Complete genome sequence of Haloterrigena turkmenica type strain (4k T)

AU - Saunders, Elisabeth

AU - Tindall, Brian J.

AU - Fähnrich, Regine

AU - Lapidus, Alla

AU - Copeland, Alex

AU - del Rio, Tijana Glavina

AU - Lucas, Susan

AU - Chen, Feng

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Han, Cliff

AU - Detter, John C.

AU - Bruce, David

AU - Goodwin, Lynne

AU - Chain, Patrick

AU - Pitluck, Sam

AU - Pati, Amrita

AU - Ivanova, Natalia

AU - Mavromatis, Konstantinos

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Brettin, Thomas

AU - Rohde, Manfred

AU - Göker, Markus

AU - Bristow, James

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Klenk, Hans Peter

AU - Kyrpides, Nikos C.

PY - 2010

Y1 - 2010

N2 - Haloterrigena turkmenica (Zvyagintseva and Tarasov 1987) Ventosa et al. 1999, comb. nov. is the type species of the genus Haloterrigena in the euryarchaeal family Halobacteriaceae. It is of phylogenetic interest because of the yet unclear position of the genera Haloterrigena and Natrinema within the Halobacteriaceae, which created some taxonomic problems historically. H. turkmenica, was isolated from sulfate saline soil in Turkmenistan, is a relatively fast growing, chemoorganotrophic, carotenoid-containing, extreme halophile, requiring at least 2 M NaCl for growth. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Haloterrigena, but the eighth genome sequence from a member of the family Halobacteriaceae. The 5,440,782 bp genome (including six plasmids) with its 5,287 protein-coding and 63 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Haloterrigena turkmenica (Zvyagintseva and Tarasov 1987) Ventosa et al. 1999, comb. nov. is the type species of the genus Haloterrigena in the euryarchaeal family Halobacteriaceae. It is of phylogenetic interest because of the yet unclear position of the genera Haloterrigena and Natrinema within the Halobacteriaceae, which created some taxonomic problems historically. H. turkmenica, was isolated from sulfate saline soil in Turkmenistan, is a relatively fast growing, chemoorganotrophic, carotenoid-containing, extreme halophile, requiring at least 2 M NaCl for growth. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Haloterrigena, but the eighth genome sequence from a member of the family Halobacteriaceae. The 5,440,782 bp genome (including six plasmids) with its 5,287 protein-coding and 63 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Aerobic

KW - Carotenoidscontaining

KW - Extreme halophile

KW - Free-living

KW - GEBA

KW - Halobacteriaceae

KW - Non-pathogenic

KW - Thermophile

UR - http://www.scopus.com/inward/record.url?scp=78149419515&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=78149419515&partnerID=8YFLogxK

U2 - 10.4056/sigs.681272

DO - 10.4056/sigs.681272

M3 - Article

C2 - 21304683

AN - SCOPUS:78149419515

VL - 2

SP - 107

EP - 116

JO - Environmental Microbiomes

JF - Environmental Microbiomes

SN - 1944-3277

IS - 1

ER -