Complete genome sequence of Halomicrobium mukohataei type strain (arg-2 T)

Brian J. Tindall, Susanne Schneider, Alla Lapidus, Alex Copeland, Tijana Glavina del Rio, Matt Nolan, Susan Lucas, Feng Chen, Hope Tice, Jan Fang Cheng, Elizabeth Saunders, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Mikhailova, Amrita Pati, Natalia Ivanova, Konstantinos Mavrommatis, Amy Chen, Krishna PalaniappanPatrick Chain, Miriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. Jeffries, Thomas Brettin, Cliff Han, Manfred Rohde, Markus Göker, Jim Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Hans Peter Klenk, Nikos C. Kyrpides, John C. Detter

Research output: Contribution to journalArticle

26 Citations (Scopus)

Abstract

Halomicrobium mukohataei (Ihara et al. 1997) Oren et al. 2002 is the type species of the genus Halomicrobium. It is of phylogenetic interest because of its isolated location within the large euryarchaeal family Halobacteriaceae. H. mukohataei is an extreme halophile that grows essentially aerobically, but can also grow anaerobically under a change of morphology and with nitrate as electron acceptor. The strain, whose genome is described in this report, is a free-living, motile, Gram-negative euryarchaeon, originally isolated from Salinas Grandes in Jujuy, Andes highlands, Argentina. Its genome contains three genes for the 16S rRNA that differ from each other by up to 9%. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence from the poorly populated genus Halomicrobium, and the 3,332,349 bp long genome (chromosome and one plasmid) with its 3416 protein-coding and 56 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)270-277
Number of pages8
JournalStandards in Genomic Sciences
Volume1
Issue number3
DOIs
StatePublished - 2009

Fingerprint

Genome
Halobacteriaceae
Halobacteriales
Encyclopedias
Archaea
Argentina
rRNA Genes
Nitrates
Plasmids
Chromosomes
RNA
Electrons
Bacteria
Genes
Proteins

Keywords

  • Extreme halophile
  • Facultatively anaerobic
  • Free-living
  • Halobacteriaceae
  • Mesophile
  • Motile
  • Non-pathogenic
  • Rod-shaped

ASJC Scopus subject areas

  • Genetics

Cite this

Tindall, B. J., Schneider, S., Lapidus, A., Copeland, A., del Rio, T. G., Nolan, M., ... Detter, J. C. (2009). Complete genome sequence of Halomicrobium mukohataei type strain (arg-2 T). Standards in Genomic Sciences, 1(3), 270-277. https://doi.org/10.4056/sigs.42644

Complete genome sequence of Halomicrobium mukohataei type strain (arg-2 T). / Tindall, Brian J.; Schneider, Susanne; Lapidus, Alla; Copeland, Alex; del Rio, Tijana Glavina; Nolan, Matt; Lucas, Susan; Chen, Feng; Tice, Hope; Cheng, Jan Fang; Saunders, Elizabeth; Bruce, David; Goodwin, Lynne; Pitluck, Sam; Mikhailova, Natalia; Pati, Amrita; Ivanova, Natalia; Mavrommatis, Konstantinos; Chen, Amy; Palaniappan, Krishna; Chain, Patrick; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Brettin, Thomas; Han, Cliff; Rohde, Manfred; Göker, Markus; Bristow, Jim; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans Peter; Kyrpides, Nikos C.; Detter, John C.

In: Standards in Genomic Sciences, Vol. 1, No. 3, 2009, p. 270-277.

Research output: Contribution to journalArticle

Tindall, BJ, Schneider, S, Lapidus, A, Copeland, A, del Rio, TG, Nolan, M, Lucas, S, Chen, F, Tice, H, Cheng, JF, Saunders, E, Bruce, D, Goodwin, L, Pitluck, S, Mikhailova, N, Pati, A, Ivanova, N, Mavrommatis, K, Chen, A, Palaniappan, K, Chain, P, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Brettin, T, Han, C, Rohde, M, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Klenk, HP, Kyrpides, NC & Detter, JC 2009, 'Complete genome sequence of Halomicrobium mukohataei type strain (arg-2 T)', Standards in Genomic Sciences, vol. 1, no. 3, pp. 270-277. https://doi.org/10.4056/sigs.42644
Tindall BJ, Schneider S, Lapidus A, Copeland A, del Rio TG, Nolan M et al. Complete genome sequence of Halomicrobium mukohataei type strain (arg-2 T). Standards in Genomic Sciences. 2009;1(3):270-277. https://doi.org/10.4056/sigs.42644
Tindall, Brian J. ; Schneider, Susanne ; Lapidus, Alla ; Copeland, Alex ; del Rio, Tijana Glavina ; Nolan, Matt ; Lucas, Susan ; Chen, Feng ; Tice, Hope ; Cheng, Jan Fang ; Saunders, Elizabeth ; Bruce, David ; Goodwin, Lynne ; Pitluck, Sam ; Mikhailova, Natalia ; Pati, Amrita ; Ivanova, Natalia ; Mavrommatis, Konstantinos ; Chen, Amy ; Palaniappan, Krishna ; Chain, Patrick ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Brettin, Thomas ; Han, Cliff ; Rohde, Manfred ; Göker, Markus ; Bristow, Jim ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Klenk, Hans Peter ; Kyrpides, Nikos C. ; Detter, John C. / Complete genome sequence of Halomicrobium mukohataei type strain (arg-2 T). In: Standards in Genomic Sciences. 2009 ; Vol. 1, No. 3. pp. 270-277.
@article{72a3879972f443c49c6a9bdd9b15290e,
title = "Complete genome sequence of Halomicrobium mukohataei type strain (arg-2 T)",
abstract = "Halomicrobium mukohataei (Ihara et al. 1997) Oren et al. 2002 is the type species of the genus Halomicrobium. It is of phylogenetic interest because of its isolated location within the large euryarchaeal family Halobacteriaceae. H. mukohataei is an extreme halophile that grows essentially aerobically, but can also grow anaerobically under a change of morphology and with nitrate as electron acceptor. The strain, whose genome is described in this report, is a free-living, motile, Gram-negative euryarchaeon, originally isolated from Salinas Grandes in Jujuy, Andes highlands, Argentina. Its genome contains three genes for the 16S rRNA that differ from each other by up to 9{\%}. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence from the poorly populated genus Halomicrobium, and the 3,332,349 bp long genome (chromosome and one plasmid) with its 3416 protein-coding and 56 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Extreme halophile, Facultatively anaerobic, Free-living, Halobacteriaceae, Mesophile, Motile, Non-pathogenic, Rod-shaped",
author = "Tindall, {Brian J.} and Susanne Schneider and Alla Lapidus and Alex Copeland and {del Rio}, {Tijana Glavina} and Matt Nolan and Susan Lucas and Feng Chen and Hope Tice and Cheng, {Jan Fang} and Elizabeth Saunders and David Bruce and Lynne Goodwin and Sam Pitluck and Natalia Mikhailova and Amrita Pati and Natalia Ivanova and Konstantinos Mavrommatis and Amy Chen and Krishna Palaniappan and Patrick Chain and Miriam Land and Loren Hauser and Chang, {Yun Juan} and Jeffries, {Cynthia D.} and Thomas Brettin and Cliff Han and Manfred Rohde and Markus G{\"o}ker and Jim Bristow and Eisen, {Jonathan A} and Victor Markowitz and Philip Hugenholtz and Klenk, {Hans Peter} and Kyrpides, {Nikos C.} and Detter, {John C.}",
year = "2009",
doi = "10.4056/sigs.42644",
language = "English (US)",
volume = "1",
pages = "270--277",
journal = "Environmental Microbiomes",
issn = "1944-3277",
publisher = "BioMed Central Ltd.",
number = "3",

}

TY - JOUR

T1 - Complete genome sequence of Halomicrobium mukohataei type strain (arg-2 T)

AU - Tindall, Brian J.

AU - Schneider, Susanne

AU - Lapidus, Alla

AU - Copeland, Alex

AU - del Rio, Tijana Glavina

AU - Nolan, Matt

AU - Lucas, Susan

AU - Chen, Feng

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Saunders, Elizabeth

AU - Bruce, David

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Mikhailova, Natalia

AU - Pati, Amrita

AU - Ivanova, Natalia

AU - Mavrommatis, Konstantinos

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Chain, Patrick

AU - Land, Miriam

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Brettin, Thomas

AU - Han, Cliff

AU - Rohde, Manfred

AU - Göker, Markus

AU - Bristow, Jim

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Klenk, Hans Peter

AU - Kyrpides, Nikos C.

AU - Detter, John C.

PY - 2009

Y1 - 2009

N2 - Halomicrobium mukohataei (Ihara et al. 1997) Oren et al. 2002 is the type species of the genus Halomicrobium. It is of phylogenetic interest because of its isolated location within the large euryarchaeal family Halobacteriaceae. H. mukohataei is an extreme halophile that grows essentially aerobically, but can also grow anaerobically under a change of morphology and with nitrate as electron acceptor. The strain, whose genome is described in this report, is a free-living, motile, Gram-negative euryarchaeon, originally isolated from Salinas Grandes in Jujuy, Andes highlands, Argentina. Its genome contains three genes for the 16S rRNA that differ from each other by up to 9%. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence from the poorly populated genus Halomicrobium, and the 3,332,349 bp long genome (chromosome and one plasmid) with its 3416 protein-coding and 56 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Halomicrobium mukohataei (Ihara et al. 1997) Oren et al. 2002 is the type species of the genus Halomicrobium. It is of phylogenetic interest because of its isolated location within the large euryarchaeal family Halobacteriaceae. H. mukohataei is an extreme halophile that grows essentially aerobically, but can also grow anaerobically under a change of morphology and with nitrate as electron acceptor. The strain, whose genome is described in this report, is a free-living, motile, Gram-negative euryarchaeon, originally isolated from Salinas Grandes in Jujuy, Andes highlands, Argentina. Its genome contains three genes for the 16S rRNA that differ from each other by up to 9%. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence from the poorly populated genus Halomicrobium, and the 3,332,349 bp long genome (chromosome and one plasmid) with its 3416 protein-coding and 56 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Extreme halophile

KW - Facultatively anaerobic

KW - Free-living

KW - Halobacteriaceae

KW - Mesophile

KW - Motile

KW - Non-pathogenic

KW - Rod-shaped

UR - http://www.scopus.com/inward/record.url?scp=77952891383&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=77952891383&partnerID=8YFLogxK

U2 - 10.4056/sigs.42644

DO - 10.4056/sigs.42644

M3 - Article

C2 - 21304667

AN - SCOPUS:77952891383

VL - 1

SP - 270

EP - 277

JO - Environmental Microbiomes

JF - Environmental Microbiomes

SN - 1944-3277

IS - 3

ER -