Complete genome sequence of Haliangium ochraceum type strain (SMP-2 T)

Natalia Ivanova, Chris Daum, Elke Lang, Birte Abt, Markus Kopitz, Elizabeth Saunders, Alla Lapidus, Susan Lucas, Tijana Glavina del Rio, Matt Nolan, Hope Tice, Alex Copeland, Jan Fang Cheng, Feng Chen, David Bruce, Lynne Goodwin, Sam Pitluck, Konstantinos Mavromatis, Amrita Pati, Natalia MikhailovaAmy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. Jeffries, John C. Detter, Thomas Brettin, Manfred Rohde, Markus Göker, Jim Bristow, Victor Markowitz, Jonathan A Eisen, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk

Research output: Contribution to journalArticle

48 Citations (Scopus)

Abstract

Haliangium ochraceum Fudou et al. 2002 is the type species of the genus Haliangium in the myxococcal family 'Haliangiaceae'. Members of the genus Haliangium are the first halophilic myxobacterial taxa described. The cells of the species follow a multicellular lifestyle in highly organized biofilms, called swarms, they decompose bacterial and yeast cells as most myxobacteria do. The fruiting bodies contain particularly small coccoid myxospores. H. ochraceum encodes the first actin homologue identified in a bacterial genome. Here we describe the features of this organism, together with the complete genome sequence, and an-notation. This is the first complete genome sequence of a member of the myxococcal suborder Nannocystineae, and the 9,446,314 bp long single replicon genome with its 6,898 protein-coding and 53 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)96-106
Number of pages11
JournalStandards in Genomic Sciences
Volume2
Issue number1
DOIs
StatePublished - 2010

Fingerprint

Genome
Myxococcales
Encyclopedias
Bacterial Genomes
Replicon
Archaea
Biofilms
Life Style
Actins
Yeasts
RNA
Bacteria
Genes
Proteins

Keywords

  • Aerobic
  • Decomposition of bacterial and yeast cells
  • Fruiting bodies
  • GEBA
  • Gliding
  • Gram-negative
  • Mesophile
  • Moderately halophilic
  • Myxobacteria
  • Myxococcales

ASJC Scopus subject areas

  • Genetics

Cite this

Ivanova, N., Daum, C., Lang, E., Abt, B., Kopitz, M., Saunders, E., ... Klenk, H. P. (2010). Complete genome sequence of Haliangium ochraceum type strain (SMP-2 T). Standards in Genomic Sciences, 2(1), 96-106. https://doi.org/10.4056/sigs.69.1277

Complete genome sequence of Haliangium ochraceum type strain (SMP-2 T). / Ivanova, Natalia; Daum, Chris; Lang, Elke; Abt, Birte; Kopitz, Markus; Saunders, Elizabeth; Lapidus, Alla; Lucas, Susan; del Rio, Tijana Glavina; Nolan, Matt; Tice, Hope; Copeland, Alex; Cheng, Jan Fang; Chen, Feng; Bruce, David; Goodwin, Lynne; Pitluck, Sam; Mavromatis, Konstantinos; Pati, Amrita; Mikhailova, Natalia; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Detter, John C.; Brettin, Thomas; Rohde, Manfred; Göker, Markus; Bristow, Jim; Markowitz, Victor; Eisen, Jonathan A; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

In: Standards in Genomic Sciences, Vol. 2, No. 1, 2010, p. 96-106.

Research output: Contribution to journalArticle

Ivanova, N, Daum, C, Lang, E, Abt, B, Kopitz, M, Saunders, E, Lapidus, A, Lucas, S, del Rio, TG, Nolan, M, Tice, H, Copeland, A, Cheng, JF, Chen, F, Bruce, D, Goodwin, L, Pitluck, S, Mavromatis, K, Pati, A, Mikhailova, N, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Detter, JC, Brettin, T, Rohde, M, Göker, M, Bristow, J, Markowitz, V, Eisen, JA, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2010, 'Complete genome sequence of Haliangium ochraceum type strain (SMP-2 T)', Standards in Genomic Sciences, vol. 2, no. 1, pp. 96-106. https://doi.org/10.4056/sigs.69.1277
Ivanova, Natalia ; Daum, Chris ; Lang, Elke ; Abt, Birte ; Kopitz, Markus ; Saunders, Elizabeth ; Lapidus, Alla ; Lucas, Susan ; del Rio, Tijana Glavina ; Nolan, Matt ; Tice, Hope ; Copeland, Alex ; Cheng, Jan Fang ; Chen, Feng ; Bruce, David ; Goodwin, Lynne ; Pitluck, Sam ; Mavromatis, Konstantinos ; Pati, Amrita ; Mikhailova, Natalia ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Detter, John C. ; Brettin, Thomas ; Rohde, Manfred ; Göker, Markus ; Bristow, Jim ; Markowitz, Victor ; Eisen, Jonathan A ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Complete genome sequence of Haliangium ochraceum type strain (SMP-2 T). In: Standards in Genomic Sciences. 2010 ; Vol. 2, No. 1. pp. 96-106.
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AU - Saunders, Elizabeth

AU - Lapidus, Alla

AU - Lucas, Susan

AU - del Rio, Tijana Glavina

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AU - Tice, Hope

AU - Copeland, Alex

AU - Cheng, Jan Fang

AU - Chen, Feng

AU - Bruce, David

AU - Goodwin, Lynne

AU - Pitluck, Sam

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AU - Pati, Amrita

AU - Mikhailova, Natalia

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AU - Eisen, Jonathan A

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

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