Complete genome sequence of Ferrimonas balearica type strain (PAT T)

Matt Nolan, Johannes Sikorski, Karen Davenport, Susan Lucas, Tijana Glavina del Rio, Hope Tice, Jan Fang Cheng, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. JeffriesRoxanne Tapia, Thomas Brettin, John C. Detter, Cliff Han, Montri Yasawong, Manfred Rohde, Brian J. Tindall, Markus Göker, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Alla Lapidus

Research output: Contribution to journalArticle

7 Citations (Scopus)

Abstract

Ferrimonas balearica Rossello-Mora et al. 1996 is the type species of the genus Ferrimonas, which belongs to the family Ferrimonadaceae within the Gammaproteobacteria. The species is a Gram-negative, motile, facultatively anaerobic, non spore-forming bacterium, which is of special interest because it is a chemoorganotroph and has a strictly respiratory metabolism with oxygen, nitrate, Fe(III)-oxyhydroxide, Fe(III)-citrate, MnO 2, selenate, selenite and thiosulfate as electron acceptors. This is the first completed genome sequence of a member of the genus Ferrimonas and also the first sequence from a member of the family Ferrimonadaceae. The 4,279,159 bp long genome with its 3,803 protein-coding and 144 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)174-182
Number of pages9
JournalStandards in Genomic Sciences
Volume3
Issue number2
DOIs
StatePublished - 2010

Fingerprint

Selenic Acid
Genome
Encyclopedias
Bacteria
Selenious Acid
Gammaproteobacteria
Thiosulfates
Archaea
Spores
Citric Acid
Nitrates
RNA
Electrons
Oxygen
Genes
Proteins

Keywords

  • Chemoorganotroph
  • Facultatively anaerobic
  • Ferrimonadaceae
  • Gammaproteobacteria
  • GEBA
  • Iron(III)-reducing bacterium

ASJC Scopus subject areas

  • Genetics

Cite this

Nolan, M., Sikorski, J., Davenport, K., Lucas, S., del Rio, T. G., Tice, H., ... Lapidus, A. (2010). Complete genome sequence of Ferrimonas balearica type strain (PAT T). Standards in Genomic Sciences, 3(2), 174-182. https://doi.org/10.4056/sigs.1161239

Complete genome sequence of Ferrimonas balearica type strain (PAT T). / Nolan, Matt; Sikorski, Johannes; Davenport, Karen; Lucas, Susan; del Rio, Tijana Glavina; Tice, Hope; Cheng, Jan Fang; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Ivanova, Natalia; Mavromatis, Konstantinos; Ovchinnikova, Galina; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Tapia, Roxanne; Brettin, Thomas; Detter, John C.; Han, Cliff; Yasawong, Montri; Rohde, Manfred; Tindall, Brian J.; Göker, Markus; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Lapidus, Alla.

In: Standards in Genomic Sciences, Vol. 3, No. 2, 2010, p. 174-182.

Research output: Contribution to journalArticle

Nolan, M, Sikorski, J, Davenport, K, Lucas, S, del Rio, TG, Tice, H, Cheng, JF, Goodwin, L, Pitluck, S, Liolios, K, Ivanova, N, Mavromatis, K, Ovchinnikova, G, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Tapia, R, Brettin, T, Detter, JC, Han, C, Yasawong, M, Rohde, M, Tindall, BJ, Göker, M, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Lapidus, A 2010, 'Complete genome sequence of Ferrimonas balearica type strain (PAT T)', Standards in Genomic Sciences, vol. 3, no. 2, pp. 174-182. https://doi.org/10.4056/sigs.1161239
Nolan M, Sikorski J, Davenport K, Lucas S, del Rio TG, Tice H et al. Complete genome sequence of Ferrimonas balearica type strain (PAT T). Standards in Genomic Sciences. 2010;3(2):174-182. https://doi.org/10.4056/sigs.1161239
Nolan, Matt ; Sikorski, Johannes ; Davenport, Karen ; Lucas, Susan ; del Rio, Tijana Glavina ; Tice, Hope ; Cheng, Jan Fang ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Ovchinnikova, Galina ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Tapia, Roxanne ; Brettin, Thomas ; Detter, John C. ; Han, Cliff ; Yasawong, Montri ; Rohde, Manfred ; Tindall, Brian J. ; Göker, Markus ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Lapidus, Alla. / Complete genome sequence of Ferrimonas balearica type strain (PAT T). In: Standards in Genomic Sciences. 2010 ; Vol. 3, No. 2. pp. 174-182.
@article{8180b02c51ad46f9bb4ff011e8cc9163,
title = "Complete genome sequence of Ferrimonas balearica type strain (PAT T)",
abstract = "Ferrimonas balearica Rossello-Mora et al. 1996 is the type species of the genus Ferrimonas, which belongs to the family Ferrimonadaceae within the Gammaproteobacteria. The species is a Gram-negative, motile, facultatively anaerobic, non spore-forming bacterium, which is of special interest because it is a chemoorganotroph and has a strictly respiratory metabolism with oxygen, nitrate, Fe(III)-oxyhydroxide, Fe(III)-citrate, MnO 2, selenate, selenite and thiosulfate as electron acceptors. This is the first completed genome sequence of a member of the genus Ferrimonas and also the first sequence from a member of the family Ferrimonadaceae. The 4,279,159 bp long genome with its 3,803 protein-coding and 144 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Chemoorganotroph, Facultatively anaerobic, Ferrimonadaceae, Gammaproteobacteria, GEBA, Iron(III)-reducing bacterium",
author = "Matt Nolan and Johannes Sikorski and Karen Davenport and Susan Lucas and {del Rio}, {Tijana Glavina} and Hope Tice and Cheng, {Jan Fang} and Lynne Goodwin and Sam Pitluck and Konstantinos Liolios and Natalia Ivanova and Konstantinos Mavromatis and Galina Ovchinnikova and Amrita Pati and Amy Chen and Krishna Palaniappan and Miriam Land and Loren Hauser and Chang, {Yun Juan} and Jeffries, {Cynthia D.} and Roxanne Tapia and Thomas Brettin and Detter, {John C.} and Cliff Han and Montri Yasawong and Manfred Rohde and Tindall, {Brian J.} and Markus G{\"o}ker and Tanja Woyke and James Bristow and Eisen, {Jonathan A} and Victor Markowitz and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter} and Alla Lapidus",
year = "2010",
doi = "10.4056/sigs.1161239",
language = "English (US)",
volume = "3",
pages = "174--182",
journal = "Environmental Microbiomes",
issn = "1944-3277",
publisher = "BioMed Central Ltd.",
number = "2",

}

TY - JOUR

T1 - Complete genome sequence of Ferrimonas balearica type strain (PAT T)

AU - Nolan, Matt

AU - Sikorski, Johannes

AU - Davenport, Karen

AU - Lucas, Susan

AU - del Rio, Tijana Glavina

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Ivanova, Natalia

AU - Mavromatis, Konstantinos

AU - Ovchinnikova, Galina

AU - Pati, Amrita

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Tapia, Roxanne

AU - Brettin, Thomas

AU - Detter, John C.

AU - Han, Cliff

AU - Yasawong, Montri

AU - Rohde, Manfred

AU - Tindall, Brian J.

AU - Göker, Markus

AU - Woyke, Tanja

AU - Bristow, James

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

AU - Lapidus, Alla

PY - 2010

Y1 - 2010

N2 - Ferrimonas balearica Rossello-Mora et al. 1996 is the type species of the genus Ferrimonas, which belongs to the family Ferrimonadaceae within the Gammaproteobacteria. The species is a Gram-negative, motile, facultatively anaerobic, non spore-forming bacterium, which is of special interest because it is a chemoorganotroph and has a strictly respiratory metabolism with oxygen, nitrate, Fe(III)-oxyhydroxide, Fe(III)-citrate, MnO 2, selenate, selenite and thiosulfate as electron acceptors. This is the first completed genome sequence of a member of the genus Ferrimonas and also the first sequence from a member of the family Ferrimonadaceae. The 4,279,159 bp long genome with its 3,803 protein-coding and 144 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Ferrimonas balearica Rossello-Mora et al. 1996 is the type species of the genus Ferrimonas, which belongs to the family Ferrimonadaceae within the Gammaproteobacteria. The species is a Gram-negative, motile, facultatively anaerobic, non spore-forming bacterium, which is of special interest because it is a chemoorganotroph and has a strictly respiratory metabolism with oxygen, nitrate, Fe(III)-oxyhydroxide, Fe(III)-citrate, MnO 2, selenate, selenite and thiosulfate as electron acceptors. This is the first completed genome sequence of a member of the genus Ferrimonas and also the first sequence from a member of the family Ferrimonadaceae. The 4,279,159 bp long genome with its 3,803 protein-coding and 144 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Chemoorganotroph

KW - Facultatively anaerobic

KW - Ferrimonadaceae

KW - Gammaproteobacteria

KW - GEBA

KW - Iron(III)-reducing bacterium

UR - http://www.scopus.com/inward/record.url?scp=80053460289&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=80053460289&partnerID=8YFLogxK

U2 - 10.4056/sigs.1161239

DO - 10.4056/sigs.1161239

M3 - Article

C2 - 21304747

AN - SCOPUS:80053460289

VL - 3

SP - 174

EP - 182

JO - Environmental Microbiomes

JF - Environmental Microbiomes

SN - 1944-3277

IS - 2

ER -