Complete genome sequence of Ferrimonas balearica type strain (PAT T)

Matt Nolan; Johannes Sikorski; Karen Davenport; Susan Lucas; Tijana Glavina del Rio; Hope Tice; Jan Fang Cheng; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Galina Ovchinnikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun Juan Chang; Cynthia D. Jeffries; Roxanne Tapia; Thomas Brettin; John C. Detter; Cliff Han; Montri Yasawong; Manfred Rohde; Brian J. Tindall; Markus Göker; Tanja Woyke; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C. Kyrpides; Hans Peter Klenk; Alla Lapidus

doi:10.4056/sigs.1161239

Complete genome sequence of Ferrimonas balearica type strain (PAT ^T)

Matt Nolan, Johannes Sikorski, Karen Davenport, Susan Lucas, Tijana Glavina del Rio, Hope Tice, Jan Fang Cheng, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. JeffriesRoxanne Tapia, Thomas Brettin, John C. Detter, Cliff Han, Montri Yasawong, Manfred Rohde, Brian J. Tindall, Markus Göker, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Alla Lapidus

Medical Microbiology and Immunology

Research output: Contribution to journal › Article › peer-review

7 Scopus citations

Abstract

Ferrimonas balearica Rossello-Mora et al. 1996 is the type species of the genus Ferrimonas, which belongs to the family Ferrimonadaceae within the Gammaproteobacteria. The species is a Gram-negative, motile, facultatively anaerobic, non spore-forming bacterium, which is of special interest because it is a chemoorganotroph and has a strictly respiratory metabolism with oxygen, nitrate, Fe(III)-oxyhydroxide, Fe(III)-citrate, MnO ₂, selenate, selenite and thiosulfate as electron acceptors. This is the first completed genome sequence of a member of the genus Ferrimonas and also the first sequence from a member of the family Ferrimonadaceae. The 4,279,159 bp long genome with its 3,803 protein-coding and 144 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original language	English (US)
Pages (from-to)	174-182
Number of pages	9
Journal	Standards in Genomic Sciences
Volume	3
Issue number	2
DOIs	https://doi.org/10.4056/sigs.1161239
State	Published - 2010

Keywords

Chemoorganotroph
Facultatively anaerobic
Ferrimonadaceae
Gammaproteobacteria
GEBA
Iron(III)-reducing bacterium

ASJC Scopus subject areas

Genetics

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10.4056/sigs.1161239

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Nolan, M., Sikorski, J., Davenport, K., Lucas, S., del Rio, T. G., Tice, H., Cheng, J. F., Goodwin, L., Pitluck, S., Liolios, K., Ivanova, N., Mavromatis, K., Ovchinnikova, G., Pati, A., Chen, A., Palaniappan, K., Land, M., Hauser, L., Chang, Y. J., ... Lapidus, A. (2010). Complete genome sequence of Ferrimonas balearica type strain (PAT ^T). Standards in Genomic Sciences, 3(2), 174-182. https://doi.org/10.4056/sigs.1161239

Complete genome sequence of Ferrimonas balearica type strain (PAT ^T). / Nolan, Matt; Sikorski, Johannes; Davenport, Karen; Lucas, Susan; del Rio, Tijana Glavina; Tice, Hope; Cheng, Jan Fang; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Ivanova, Natalia; Mavromatis, Konstantinos; Ovchinnikova, Galina; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Tapia, Roxanne; Brettin, Thomas; Detter, John C.; Han, Cliff; Yasawong, Montri; Rohde, Manfred; Tindall, Brian J.; Göker, Markus; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Lapidus, Alla.

In: Standards in Genomic Sciences, Vol. 3, No. 2, 2010, p. 174-182.

Research output: Contribution to journal › Article › peer-review

Nolan, M, Sikorski, J, Davenport, K, Lucas, S, del Rio, TG, Tice, H, Cheng, JF, Goodwin, L, Pitluck, S, Liolios, K, Ivanova, N, Mavromatis, K, Ovchinnikova, G, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Tapia, R, Brettin, T, Detter, JC, Han, C, Yasawong, M, Rohde, M, Tindall, BJ, Göker, M, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Lapidus, A 2010, 'Complete genome sequence of Ferrimonas balearica type strain (PAT ^T)', Standards in Genomic Sciences, vol. 3, no. 2, pp. 174-182. https://doi.org/10.4056/sigs.1161239

Nolan, Matt ; Sikorski, Johannes ; Davenport, Karen ; Lucas, Susan ; del Rio, Tijana Glavina ; Tice, Hope ; Cheng, Jan Fang ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Ovchinnikova, Galina ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Tapia, Roxanne ; Brettin, Thomas ; Detter, John C. ; Han, Cliff ; Yasawong, Montri ; Rohde, Manfred ; Tindall, Brian J. ; Göker, Markus ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Lapidus, Alla. / Complete genome sequence of Ferrimonas balearica type strain (PAT ^T). In: Standards in Genomic Sciences. 2010 ; Vol. 3, No. 2. pp. 174-182.

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abstract = "Ferrimonas balearica Rossello-Mora et al. 1996 is the type species of the genus Ferrimonas, which belongs to the family Ferrimonadaceae within the Gammaproteobacteria. The species is a Gram-negative, motile, facultatively anaerobic, non spore-forming bacterium, which is of special interest because it is a chemoorganotroph and has a strictly respiratory metabolism with oxygen, nitrate, Fe(III)-oxyhydroxide, Fe(III)-citrate, MnO 2, selenate, selenite and thiosulfate as electron acceptors. This is the first completed genome sequence of a member of the genus Ferrimonas and also the first sequence from a member of the family Ferrimonadaceae. The 4,279,159 bp long genome with its 3,803 protein-coding and 144 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.",

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AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Ivanova, Natalia

AU - Mavromatis, Konstantinos

AU - Ovchinnikova, Galina

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AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

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AU - Detter, John C.

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AU - Göker, Markus

AU - Woyke, Tanja

AU - Bristow, James

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

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