Complete genome sequence of Dyadobacter fermentans type strain (NS114 T)

Elke Lang, Alla Lapidus, Olga Chertkov, Thomas Brettin, John C. Detter, Cliff Han, Alex Copeland, Tijana Glavina del Rio, Matt Nolan, Feng Chen, Susan Lucas, Hope Tice, Jan Fang Cheng, Miriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. Jef-Fries, Marcus Kopitz, David Bruce, Lynne GoodwinSam Pitluck, Galina Ovchinni-Kova, Amrita Pati, Natalia Ivanova, Konstantinos Mavrommatis, Amy Chen, Krishna Pa-Laniappan, Patrick Chain, Jim Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Markus Göker, Manfred Rohde, Nikos C. Kyrpides, Hans Peter Klenk

Research output: Contribution to journalArticle

20 Citations (Scopus)

Abstract

Dyadobacter fermentans (Chelius and Triplett, 2000) is the type species of the genus Dyadobacter. It is of phylogenetic interest because of its location in the Cytophagaceae, a very diverse family within the order 'Sphingobacteriales'. D. fermentans has a mainly respiratory metabolism, stains Gram-negative, is non-motile and oxidase and catalase positive. It is characterized by the production of cell filaments in aging cultures, a flexirubin-like pigment and its ability to ferment glucose, which is almost unique in the aerobically living members of this taxonomically difficult family. Here we describe the features of this organism, together with the complete genome sequence, and its annotation. This is the first complete genome sequence of the sphingobacterial genus Dyadobacter, and this 6,967,790 bp long single replicon genome with its 5804 protein-coding and 50 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)133-140
Number of pages8
JournalStandards in Genomic Sciences
Volume1
Issue number2
DOIs
StatePublished - 2009

Fingerprint

Genome
Cytophagaceae
Encyclopedias
Replicon
Archaea
Catalase
Oxidoreductases
RNA
Bacteria
Glucose
Genes
Proteins
flexirubins
Gram's stain

Keywords

  • Aerobic
  • Chains of rods
  • Cytophagaceae
  • Free-living
  • Mesophile
  • Non-pathogenic

ASJC Scopus subject areas

  • Genetics

Cite this

Lang, E., Lapidus, A., Chertkov, O., Brettin, T., Detter, J. C., Han, C., ... Klenk, H. P. (2009). Complete genome sequence of Dyadobacter fermentans type strain (NS114 T). Standards in Genomic Sciences, 1(2), 133-140. https://doi.org/10.4056/sigs.19262

Complete genome sequence of Dyadobacter fermentans type strain (NS114 T). / Lang, Elke; Lapidus, Alla; Chertkov, Olga; Brettin, Thomas; Detter, John C.; Han, Cliff; Copeland, Alex; Glavina del Rio, Tijana; Nolan, Matt; Chen, Feng; Lucas, Susan; Tice, Hope; Cheng, Jan Fang; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jef-Fries, Cynthia D.; Kopitz, Marcus; Bruce, David; Goodwin, Lynne; Pitluck, Sam; Ovchinni-Kova, Galina; Pati, Amrita; Ivanova, Natalia; Mavrommatis, Konstantinos; Chen, Amy; Pa-Laniappan, Krishna; Chain, Patrick; Bristow, Jim; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Göker, Markus; Rohde, Manfred; Kyrpides, Nikos C.; Klenk, Hans Peter.

In: Standards in Genomic Sciences, Vol. 1, No. 2, 2009, p. 133-140.

Research output: Contribution to journalArticle

Lang, E, Lapidus, A, Chertkov, O, Brettin, T, Detter, JC, Han, C, Copeland, A, Glavina del Rio, T, Nolan, M, Chen, F, Lucas, S, Tice, H, Cheng, JF, Land, M, Hauser, L, Chang, YJ, Jef-Fries, CD, Kopitz, M, Bruce, D, Goodwin, L, Pitluck, S, Ovchinni-Kova, G, Pati, A, Ivanova, N, Mavrommatis, K, Chen, A, Pa-Laniappan, K, Chain, P, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Göker, M, Rohde, M, Kyrpides, NC & Klenk, HP 2009, 'Complete genome sequence of Dyadobacter fermentans type strain (NS114 T)', Standards in Genomic Sciences, vol. 1, no. 2, pp. 133-140. https://doi.org/10.4056/sigs.19262
Lang, Elke ; Lapidus, Alla ; Chertkov, Olga ; Brettin, Thomas ; Detter, John C. ; Han, Cliff ; Copeland, Alex ; Glavina del Rio, Tijana ; Nolan, Matt ; Chen, Feng ; Lucas, Susan ; Tice, Hope ; Cheng, Jan Fang ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jef-Fries, Cynthia D. ; Kopitz, Marcus ; Bruce, David ; Goodwin, Lynne ; Pitluck, Sam ; Ovchinni-Kova, Galina ; Pati, Amrita ; Ivanova, Natalia ; Mavrommatis, Konstantinos ; Chen, Amy ; Pa-Laniappan, Krishna ; Chain, Patrick ; Bristow, Jim ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Göker, Markus ; Rohde, Manfred ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Complete genome sequence of Dyadobacter fermentans type strain (NS114 T). In: Standards in Genomic Sciences. 2009 ; Vol. 1, No. 2. pp. 133-140.
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AU - Detter, John C.

AU - Han, Cliff

AU - Copeland, Alex

AU - Glavina del Rio, Tijana

AU - Nolan, Matt

AU - Chen, Feng

AU - Lucas, Susan

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Land, Miriam

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jef-Fries, Cynthia D.

AU - Kopitz, Marcus

AU - Bruce, David

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Ovchinni-Kova, Galina

AU - Pati, Amrita

AU - Ivanova, Natalia

AU - Mavrommatis, Konstantinos

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AU - Chain, Patrick

AU - Bristow, Jim

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Göker, Markus

AU - Rohde, Manfred

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

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