Complete genome sequence of Desulfobulbus propionicus type strain (1pr3 T)

Ioanna Pagani, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Desh-Pande, Jan Fang Cheng, Olga Chertkov, Karen Davenport, Roxane Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Konstantinos Mavromatis, Natalia Ivanova, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna PalaniappanMiriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. Jeffries, John C. Detter, Evelyne Brambilla, K. Palani Kannan, Olivier D Ngatchou Djao, Manfred Rohde, Rüdiger Pukall, Stefan Spring, Markus Göker, Johannes Sikorski, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk

Research output: Contribution to journalArticle

30 Citations (Scopus)

Abstract

Desulfobulbus propionicus Widdel 1981 is the type species of the genus Desulfobulbus, which belongs to the family Desulfobulbaceae. The species is of interest because of its great implication in the sulfur cycle in aquatic sediments, its large substrate spectrum and a broad versatility in using various fermentation pathways. The species was the first example of a pure culture known to disproportionate elemental sulfur to sulfate and sulfide. This is the first completed genome sequence of a member of the genus Desulfobulbus and the third pub-lished genome sequence from a member of the family Desulfobulbaceae. The 3,851,869 bp long genome with its 3,351 protein-coding and 57 RNA genes is a part of the Genomic En-cyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)100-110
Number of pages11
JournalStandards in Genomic Sciences
Volume4
Issue number1
DOIs
StatePublished - 2011

Fingerprint

Genome
Sulfur
Archaea
Sulfides
Sulfates
Fermentation
RNA
Bacteria
Genes
Proteins

Keywords

  • Anaerobic
  • Chemoorganotroph
  • Desulfobulbaceae
  • Ellipsoidal to lemon-shaped
  • Geba
  • Gram-negative
  • Mesophilic
  • Non spore-forming
  • Non-motile

ASJC Scopus subject areas

  • Genetics

Cite this

Pagani, I., Lapidus, A., Nolan, M., Lucas, S., Hammon, N., Desh-Pande, S., ... Klenk, H. P. (2011). Complete genome sequence of Desulfobulbus propionicus type strain (1pr3 T). Standards in Genomic Sciences, 4(1), 100-110. https://doi.org/10.4056/sigs.1613929

Complete genome sequence of Desulfobulbus propionicus type strain (1pr3 T). / Pagani, Ioanna; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Desh-Pande, Shweta; Cheng, Jan Fang; Chertkov, Olga; Davenport, Karen; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Detter, John C.; Brambilla, Evelyne; Kannan, K. Palani; Djao, Olivier D Ngatchou; Rohde, Manfred; Pukall, Rüdiger; Spring, Stefan; Göker, Markus; Sikorski, Johannes; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

In: Standards in Genomic Sciences, Vol. 4, No. 1, 2011, p. 100-110.

Research output: Contribution to journalArticle

Pagani, I, Lapidus, A, Nolan, M, Lucas, S, Hammon, N, Desh-Pande, S, Cheng, JF, Chertkov, O, Davenport, K, Tapia, R, Han, C, Goodwin, L, Pitluck, S, Liolios, K, Mavromatis, K, Ivanova, N, Mikhailova, N, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Detter, JC, Brambilla, E, Kannan, KP, Djao, ODN, Rohde, M, Pukall, R, Spring, S, Göker, M, Sikorski, J, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2011, 'Complete genome sequence of Desulfobulbus propionicus type strain (1pr3 T)', Standards in Genomic Sciences, vol. 4, no. 1, pp. 100-110. https://doi.org/10.4056/sigs.1613929
Pagani, Ioanna ; Lapidus, Alla ; Nolan, Matt ; Lucas, Susan ; Hammon, Nancy ; Desh-Pande, Shweta ; Cheng, Jan Fang ; Chertkov, Olga ; Davenport, Karen ; Tapia, Roxane ; Han, Cliff ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Mavromatis, Konstantinos ; Ivanova, Natalia ; Mikhailova, Natalia ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Detter, John C. ; Brambilla, Evelyne ; Kannan, K. Palani ; Djao, Olivier D Ngatchou ; Rohde, Manfred ; Pukall, Rüdiger ; Spring, Stefan ; Göker, Markus ; Sikorski, Johannes ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Complete genome sequence of Desulfobulbus propionicus type strain (1pr3 T). In: Standards in Genomic Sciences. 2011 ; Vol. 4, No. 1. pp. 100-110.
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AU - Lapidus, Alla

AU - Nolan, Matt

AU - Lucas, Susan

AU - Hammon, Nancy

AU - Desh-Pande, Shweta

AU - Cheng, Jan Fang

AU - Chertkov, Olga

AU - Davenport, Karen

AU - Tapia, Roxane

AU - Han, Cliff

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Mavromatis, Konstantinos

AU - Ivanova, Natalia

AU - Mikhailova, Natalia

AU - Pati, Amrita

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Detter, John C.

AU - Brambilla, Evelyne

AU - Kannan, K. Palani

AU - Djao, Olivier D Ngatchou

AU - Rohde, Manfred

AU - Pukall, Rüdiger

AU - Spring, Stefan

AU - Göker, Markus

AU - Sikorski, Johannes

AU - Woyke, Tanja

AU - Bristow, James

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

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