Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460 T)

Hajnalka Kiss, Elke Lang, Alla Lapidus, Alex Copeland, Matt Nolan, Tijana Glavina del Rio, Feng Chen, Susan Lucas, Hope Tice, Jan Fang Cheng, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Amrita Pati, Natalia Ivanova, Konstantinos Mavromatis, Amy Chen, Krishna Palaniappan, Miriam LandLoren Hauser, Yun Juan Chang, Cynthia D. Jeffries, John C. Detter, Thomas Brettin, Stefan Spring, Manfred Rohde, Markus Göker, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk

Research output: Contribution to journalArticle

10 Scopus citations

Abstract

Denitrovibrio acetiphilus Myhr and Torsvik 2000 is the type species of the genus Denitrovi-brio in the bacterial family Deferribacteraceae. It is of phylogenetic interest because there are only six genera described in the family Deferribacteraceae. D. acetiphilus was isolated as a representative of a population reducing nitrate to ammonia in a laboratory column simulating the conditions in off-shore oil recovery fields. When nitrate was added to this column unde-sirable hydrogen sulfide production was stopped because the sulfate reducing populations were superseded by these nitrate reducing bacteria. Here we describe the features of this ma-rine, mesophilic, obligately anaerobic organism respiring by nitrate reduction, together with the complete genome sequence, and annotation. This is the second complete genome se-quence of the order Deferribacterales and the class Deferribacteres, which is the sole class in the phylum Deferribacteres. The 3,222,077 bp genome with its 3,034 protein-coding and 51 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)270-279
Number of pages10
JournalStandards in Genomic Sciences
Volume2
Issue number3
DOIs
StatePublished - 2010

Keywords

  • Deferribacteraceae
  • Deferribacteres
  • Dissimilatory nitrate-reducer
  • Free-living
  • GEBA
  • Marine
  • Mesophile
  • Motile
  • Obligately anaerobic

ASJC Scopus subject areas

  • Genetics

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    Kiss, H., Lang, E., Lapidus, A., Copeland, A., Nolan, M., del Rio, T. G., Chen, F., Lucas, S., Tice, H., Cheng, J. F., Han, C., Goodwin, L., Pitluck, S., Liolios, K., Pati, A., Ivanova, N., Mavromatis, K., Chen, A., Palaniappan, K., ... Klenk, H. P. (2010). Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460 T). Standards in Genomic Sciences, 2(3), 270-279. https://doi.org/10.4056/sigs.892105