Complete genome sequence of coraliomargarita akajimensis type strain (04OKA010-24 T)

Konstantinos Mavromatis, Birte Abt, Evelyne Brambilla, Alla Lapidus, Alex Copeland, Shweta Deshpande, Matt Nolan, Susan Lucas, Hope Tice, Jan Fang Cheng, Cliff Han, John C. Detter, Tanja Woyke, Lynne Goodwin, Sam Pitluck, Brittany Held, Thomas Brettin, Roxanne Tapia, Natalia Ivanova, Natalia MikhailovaAmrita Pati, Konstantinos Liolios, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. Jeffries, Manfred Rohde, Markus Göker, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Hans Peter Klenk, Nikos C. Kyrpides

Research output: Contribution to journalArticle

14 Citations (Scopus)

Abstract

Coraliomargarita akajimensis Yoon et al. 2007 is the type species of the genus Coraliomargari-ta. C. akajimensis is an obligately aerobic, Gram-negative, non-spore-forming, non-motile, spherical bacterium that was isolated from seawater surrounding the hard coral Galaxea fas-cicularis. C. akajimensis is of special interest because of its phylogenetic position in a genom-ically under-studied area of the bacterial diversity. Here we describe the features of this or-ganism, together with the complete genome sequence, and annotation. This is the first com-plete genome sequence of a member of the family Puniceicoccaceae. The 3,750,771 bp long genome with its 3,137 protein-coding and 55 RNA genes is a part of the Genomic Encyclo-pedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)290-299
Number of pages10
JournalStandards in Genomic Sciences
Volume2
Issue number3
DOIs
StatePublished - 2010

Fingerprint

Genome
Bacteria
Anthozoa
Archaea
Seawater
RNA
Genes
Proteins

Keywords

  • Aerobic
  • GEBA
  • Gram-negative
  • Mesophile
  • Non-motile
  • Non-spore-forming
  • Opitutae
  • Puniceicoccaceae
  • Sphere-shaped

ASJC Scopus subject areas

  • Genetics

Cite this

Mavromatis, K., Abt, B., Brambilla, E., Lapidus, A., Copeland, A., Deshpande, S., ... Kyrpides, N. C. (2010). Complete genome sequence of coraliomargarita akajimensis type strain (04OKA010-24 T). Standards in Genomic Sciences, 2(3), 290-299. https://doi.org/10.4056/sigs.952166

Complete genome sequence of coraliomargarita akajimensis type strain (04OKA010-24 T). / Mavromatis, Konstantinos; Abt, Birte; Brambilla, Evelyne; Lapidus, Alla; Copeland, Alex; Deshpande, Shweta; Nolan, Matt; Lucas, Susan; Tice, Hope; Cheng, Jan Fang; Han, Cliff; Detter, John C.; Woyke, Tanja; Goodwin, Lynne; Pitluck, Sam; Held, Brittany; Brettin, Thomas; Tapia, Roxanne; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Liolios, Konstantinos; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Rohde, Manfred; Göker, Markus; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans Peter; Kyrpides, Nikos C.

In: Standards in Genomic Sciences, Vol. 2, No. 3, 2010, p. 290-299.

Research output: Contribution to journalArticle

Mavromatis, K, Abt, B, Brambilla, E, Lapidus, A, Copeland, A, Deshpande, S, Nolan, M, Lucas, S, Tice, H, Cheng, JF, Han, C, Detter, JC, Woyke, T, Goodwin, L, Pitluck, S, Held, B, Brettin, T, Tapia, R, Ivanova, N, Mikhailova, N, Pati, A, Liolios, K, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Rohde, M, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Klenk, HP & Kyrpides, NC 2010, 'Complete genome sequence of coraliomargarita akajimensis type strain (04OKA010-24 T)', Standards in Genomic Sciences, vol. 2, no. 3, pp. 290-299. https://doi.org/10.4056/sigs.952166
Mavromatis K, Abt B, Brambilla E, Lapidus A, Copeland A, Deshpande S et al. Complete genome sequence of coraliomargarita akajimensis type strain (04OKA010-24 T). Standards in Genomic Sciences. 2010;2(3):290-299. https://doi.org/10.4056/sigs.952166
Mavromatis, Konstantinos ; Abt, Birte ; Brambilla, Evelyne ; Lapidus, Alla ; Copeland, Alex ; Deshpande, Shweta ; Nolan, Matt ; Lucas, Susan ; Tice, Hope ; Cheng, Jan Fang ; Han, Cliff ; Detter, John C. ; Woyke, Tanja ; Goodwin, Lynne ; Pitluck, Sam ; Held, Brittany ; Brettin, Thomas ; Tapia, Roxanne ; Ivanova, Natalia ; Mikhailova, Natalia ; Pati, Amrita ; Liolios, Konstantinos ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Rohde, Manfred ; Göker, Markus ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Klenk, Hans Peter ; Kyrpides, Nikos C. / Complete genome sequence of coraliomargarita akajimensis type strain (04OKA010-24 T). In: Standards in Genomic Sciences. 2010 ; Vol. 2, No. 3. pp. 290-299.
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