Complete genome sequence of coraliomargarita akajimensis type strain (04OKA010-24 T)

Konstantinos Mavromatis; Birte Abt; Evelyne Brambilla; Alla Lapidus; Alex Copeland; Shweta Deshpande; Matt Nolan; Susan Lucas; Hope Tice; Jan Fang Cheng; Cliff Han; John C. Detter; Tanja Woyke; Lynne Goodwin; Sam Pitluck; Brittany Held; Thomas Brettin; Roxanne Tapia; Natalia Ivanova; Natalia Mikhailova; Amrita Pati; Konstantinos Liolios; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun Juan Chang; Cynthia D. Jeffries; Manfred Rohde; Markus Göker; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Hans Peter Klenk; Nikos C. Kyrpides

doi:10.4056/sigs.952166

Complete genome sequence of coraliomargarita akajimensis type strain (04OKA010-24 ^T)

Konstantinos Mavromatis, Birte Abt, Evelyne Brambilla, Alla Lapidus, Alex Copeland, Shweta Deshpande, Matt Nolan, Susan Lucas, Hope Tice, Jan Fang Cheng, Cliff Han, John C. Detter, Tanja Woyke, Lynne Goodwin, Sam Pitluck, Brittany Held, Thomas Brettin, Roxanne Tapia, Natalia Ivanova, Natalia MikhailovaAmrita Pati, Konstantinos Liolios, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. Jeffries, Manfred Rohde, Markus Göker, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Hans Peter Klenk, Nikos C. Kyrpides

Medical Microbiology and Immunology

Research output: Contribution to journal › Article › peer-review

16 Scopus citations

Abstract

Coraliomargarita akajimensis Yoon et al. 2007 is the type species of the genus Coraliomargari-ta. C. akajimensis is an obligately aerobic, Gram-negative, non-spore-forming, non-motile, spherical bacterium that was isolated from seawater surrounding the hard coral Galaxea fas-cicularis. C. akajimensis is of special interest because of its phylogenetic position in a genom-ically under-studied area of the bacterial diversity. Here we describe the features of this or-ganism, together with the complete genome sequence, and annotation. This is the first com-plete genome sequence of a member of the family Puniceicoccaceae. The 3,750,771 bp long genome with its 3,137 protein-coding and 55 RNA genes is a part of the Genomic Encyclo-pedia of Bacteria and Archaea project.

Original language	English (US)
Pages (from-to)	290-299
Number of pages	10
Journal	Standards in Genomic Sciences
Volume	2
Issue number	3
DOIs	https://doi.org/10.4056/sigs.952166
State	Published - 2010

Keywords

Aerobic
GEBA
Gram-negative
Mesophile
Non-motile
Non-spore-forming
Opitutae
Puniceicoccaceae
Sphere-shaped

ASJC Scopus subject areas

Genetics

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10.4056/sigs.952166

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Mavromatis, K., Abt, B., Brambilla, E., Lapidus, A., Copeland, A., Deshpande, S., Nolan, M., Lucas, S., Tice, H., Cheng, J. F., Han, C., Detter, J. C., Woyke, T., Goodwin, L., Pitluck, S., Held, B., Brettin, T., Tapia, R., Ivanova, N., ... Kyrpides, N. C. (2010). Complete genome sequence of coraliomargarita akajimensis type strain (04OKA010-24 ^T). Standards in Genomic Sciences, 2(3), 290-299. https://doi.org/10.4056/sigs.952166

Complete genome sequence of coraliomargarita akajimensis type strain (04OKA010-24 ^T). / Mavromatis, Konstantinos; Abt, Birte; Brambilla, Evelyne; Lapidus, Alla; Copeland, Alex; Deshpande, Shweta; Nolan, Matt; Lucas, Susan; Tice, Hope; Cheng, Jan Fang; Han, Cliff; Detter, John C.; Woyke, Tanja; Goodwin, Lynne; Pitluck, Sam; Held, Brittany; Brettin, Thomas; Tapia, Roxanne; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Liolios, Konstantinos; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Rohde, Manfred; Göker, Markus; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans Peter; Kyrpides, Nikos C.

In: Standards in Genomic Sciences, Vol. 2, No. 3, 2010, p. 290-299.

Research output: Contribution to journal › Article › peer-review

Mavromatis, K, Abt, B, Brambilla, E, Lapidus, A, Copeland, A, Deshpande, S, Nolan, M, Lucas, S, Tice, H, Cheng, JF, Han, C, Detter, JC, Woyke, T, Goodwin, L, Pitluck, S, Held, B, Brettin, T, Tapia, R, Ivanova, N, Mikhailova, N, Pati, A, Liolios, K, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Rohde, M, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Klenk, HP & Kyrpides, NC 2010, 'Complete genome sequence of coraliomargarita akajimensis type strain (04OKA010-24 ^T)', Standards in Genomic Sciences, vol. 2, no. 3, pp. 290-299. https://doi.org/10.4056/sigs.952166

Mavromatis, Konstantinos ; Abt, Birte ; Brambilla, Evelyne ; Lapidus, Alla ; Copeland, Alex ; Deshpande, Shweta ; Nolan, Matt ; Lucas, Susan ; Tice, Hope ; Cheng, Jan Fang ; Han, Cliff ; Detter, John C. ; Woyke, Tanja ; Goodwin, Lynne ; Pitluck, Sam ; Held, Brittany ; Brettin, Thomas ; Tapia, Roxanne ; Ivanova, Natalia ; Mikhailova, Natalia ; Pati, Amrita ; Liolios, Konstantinos ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Rohde, Manfred ; Göker, Markus ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Klenk, Hans Peter ; Kyrpides, Nikos C. / Complete genome sequence of coraliomargarita akajimensis type strain (04OKA010-24 ^T). In: Standards in Genomic Sciences. 2010 ; Vol. 2, No. 3. pp. 290-299.

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AU - Copeland, Alex

AU - Deshpande, Shweta

AU - Nolan, Matt

AU - Lucas, Susan

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AU - Cheng, Jan Fang

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