Abstract
Coraliomargarita akajimensis Yoon et al. 2007 is the type species of the genus Coraliomargari-ta. C. akajimensis is an obligately aerobic, Gram-negative, non-spore-forming, non-motile, spherical bacterium that was isolated from seawater surrounding the hard coral Galaxea fas-cicularis. C. akajimensis is of special interest because of its phylogenetic position in a genom-ically under-studied area of the bacterial diversity. Here we describe the features of this or-ganism, together with the complete genome sequence, and annotation. This is the first com-plete genome sequence of a member of the family Puniceicoccaceae. The 3,750,771 bp long genome with its 3,137 protein-coding and 55 RNA genes is a part of the Genomic Encyclo-pedia of Bacteria and Archaea project.
| Original language | English (US) |
|---|---|
| Pages (from-to) | 290-299 |
| Number of pages | 10 |
| Journal | Standards in Genomic Sciences |
| Volume | 2 |
| Issue number | 3 |
| DOIs | |
| State | Published - 2010 |
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Keywords
- Aerobic
- GEBA
- Gram-negative
- Mesophile
- Non-motile
- Non-spore-forming
- Opitutae
- Puniceicoccaceae
- Sphere-shaped
ASJC Scopus subject areas
- Genetics
Cite this
Complete genome sequence of coraliomargarita akajimensis type strain (04OKA010-24 T). / Mavromatis, Konstantinos; Abt, Birte; Brambilla, Evelyne; Lapidus, Alla; Copeland, Alex; Deshpande, Shweta; Nolan, Matt; Lucas, Susan; Tice, Hope; Cheng, Jan Fang; Han, Cliff; Detter, John C.; Woyke, Tanja; Goodwin, Lynne; Pitluck, Sam; Held, Brittany; Brettin, Thomas; Tapia, Roxanne; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Liolios, Konstantinos; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Rohde, Manfred; Göker, Markus; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans Peter; Kyrpides, Nikos C.
In: Standards in Genomic Sciences, Vol. 2, No. 3, 2010, p. 290-299.Research output: Contribution to journal › Article
}
TY - JOUR
T1 - Complete genome sequence of coraliomargarita akajimensis type strain (04OKA010-24 T)
AU - Mavromatis, Konstantinos
AU - Abt, Birte
AU - Brambilla, Evelyne
AU - Lapidus, Alla
AU - Copeland, Alex
AU - Deshpande, Shweta
AU - Nolan, Matt
AU - Lucas, Susan
AU - Tice, Hope
AU - Cheng, Jan Fang
AU - Han, Cliff
AU - Detter, John C.
AU - Woyke, Tanja
AU - Goodwin, Lynne
AU - Pitluck, Sam
AU - Held, Brittany
AU - Brettin, Thomas
AU - Tapia, Roxanne
AU - Ivanova, Natalia
AU - Mikhailova, Natalia
AU - Pati, Amrita
AU - Liolios, Konstantinos
AU - Chen, Amy
AU - Palaniappan, Krishna
AU - Land, Miriam
AU - Hauser, Loren
AU - Chang, Yun Juan
AU - Jeffries, Cynthia D.
AU - Rohde, Manfred
AU - Göker, Markus
AU - Bristow, James
AU - Eisen, Jonathan A
AU - Markowitz, Victor
AU - Hugenholtz, Philip
AU - Klenk, Hans Peter
AU - Kyrpides, Nikos C.
PY - 2010
Y1 - 2010
N2 - Coraliomargarita akajimensis Yoon et al. 2007 is the type species of the genus Coraliomargari-ta. C. akajimensis is an obligately aerobic, Gram-negative, non-spore-forming, non-motile, spherical bacterium that was isolated from seawater surrounding the hard coral Galaxea fas-cicularis. C. akajimensis is of special interest because of its phylogenetic position in a genom-ically under-studied area of the bacterial diversity. Here we describe the features of this or-ganism, together with the complete genome sequence, and annotation. This is the first com-plete genome sequence of a member of the family Puniceicoccaceae. The 3,750,771 bp long genome with its 3,137 protein-coding and 55 RNA genes is a part of the Genomic Encyclo-pedia of Bacteria and Archaea project.
AB - Coraliomargarita akajimensis Yoon et al. 2007 is the type species of the genus Coraliomargari-ta. C. akajimensis is an obligately aerobic, Gram-negative, non-spore-forming, non-motile, spherical bacterium that was isolated from seawater surrounding the hard coral Galaxea fas-cicularis. C. akajimensis is of special interest because of its phylogenetic position in a genom-ically under-studied area of the bacterial diversity. Here we describe the features of this or-ganism, together with the complete genome sequence, and annotation. This is the first com-plete genome sequence of a member of the family Puniceicoccaceae. The 3,750,771 bp long genome with its 3,137 protein-coding and 55 RNA genes is a part of the Genomic Encyclo-pedia of Bacteria and Archaea project.
KW - Aerobic
KW - GEBA
KW - Gram-negative
KW - Mesophile
KW - Non-motile
KW - Non-spore-forming
KW - Opitutae
KW - Puniceicoccaceae
KW - Sphere-shaped
UR - http://www.scopus.com/inward/record.url?scp=80053355096&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=80053355096&partnerID=8YFLogxK
U2 - 10.4056/sigs.952166
DO - 10.4056/sigs.952166
M3 - Article
C2 - 21304713
AN - SCOPUS:80053355096
VL - 2
SP - 290
EP - 299
JO - Environmental Microbiomes
JF - Environmental Microbiomes
SN - 1944-3277
IS - 3
ER -