Complete genome sequence of Cellulophaga lytica type strain (LIM-21 T)

Amrita Pati, Birte Abt, Hazuki Teshima, Matt Nolan, Alla Lapidus, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan Fang Cheng, Roxane Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Konstantinos Mavromatis, Galina Ovchinikova, Amy Chen, Krishna Palaniappan, Miriam LandLoren Hauser, Cynthia D. Jeffries, John C. Detter, Evelyne Marie Brambilla, K. Palani Kannan, Man fred Rohde, Stefan Spring, Markus Göker, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Natalia Ivanova

Research output: Contribution to journalArticle

21 Citations (Scopus)

Abstract

Cellulophaga lytica (Lewin 1969) Johansen et al. 1999 is the type species of the genus Cellu-lophaga, which belongs to the family Flavobacteriaceae within the phylum 'Bacteroidetes' and was isolated from marine beach mud in Limon, Costa Rica. The species is of biotechno-logical interest because its members produce a wide range of extracellular enzymes capable of degrading proteins and polysaccharides. After the genome sequence of Cellulophaga algi-cola this is the second completed genome sequence of a member of the genus Cellulophaga. The 3,765,936 bp long genome with its 3,303 protein-coding and 55 RNA genes consists of one circular chromosome and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)221-232
Number of pages12
JournalStandards in Genomic Sciences
Volume4
Issue number2
DOIs
StatePublished - 2011

Fingerprint

Genome
Flavobacteriaceae
Encyclopedias
Bacteroidetes
Costa Rica
Archaea
Polysaccharides
Proteins
Chromosomes
RNA
Bacteria
Enzymes
Genes

Keywords

  • Aerobic
  • Agarolytic
  • Chemoorganotrophic
  • Fla-vobacteriaceae
  • GEBA
  • Gram-negative
  • Motile by gliding

ASJC Scopus subject areas

  • Genetics

Cite this

Pati, A., Abt, B., Teshima, H., Nolan, M., Lapidus, A., Lucas, S., ... Ivanova, N. (2011). Complete genome sequence of Cellulophaga lytica type strain (LIM-21 T). Standards in Genomic Sciences, 4(2), 221-232. https://doi.org/10.4056/sigs.1774329

Complete genome sequence of Cellulophaga lytica type strain (LIM-21 T). / Pati, Amrita; Abt, Birte; Teshima, Hazuki; Nolan, Matt; Lapidus, Alla; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan Fang; Tapia, Roxane; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Mavromatis, Konstantinos; Ovchinikova, Galina; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Jeffries, Cynthia D.; Detter, John C.; Brambilla, Evelyne Marie; Kannan, K. Palani; Rohde, Man fred; Spring, Stefan; Göker, Markus; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Ivanova, Natalia.

In: Standards in Genomic Sciences, Vol. 4, No. 2, 2011, p. 221-232.

Research output: Contribution to journalArticle

Pati, A, Abt, B, Teshima, H, Nolan, M, Lapidus, A, Lucas, S, Hammon, N, Deshpande, S, Cheng, JF, Tapia, R, Han, C, Goodwin, L, Pitluck, S, Liolios, K, Pagani, I, Mavromatis, K, Ovchinikova, G, Chen, A, Palaniappan, K, Land, M, Hauser, L, Jeffries, CD, Detter, JC, Brambilla, EM, Kannan, KP, Rohde, MF, Spring, S, Göker, M, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Ivanova, N 2011, 'Complete genome sequence of Cellulophaga lytica type strain (LIM-21 T)', Standards in Genomic Sciences, vol. 4, no. 2, pp. 221-232. https://doi.org/10.4056/sigs.1774329
Pati, Amrita ; Abt, Birte ; Teshima, Hazuki ; Nolan, Matt ; Lapidus, Alla ; Lucas, Susan ; Hammon, Nancy ; Deshpande, Shweta ; Cheng, Jan Fang ; Tapia, Roxane ; Han, Cliff ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Pagani, Ioanna ; Mavromatis, Konstantinos ; Ovchinikova, Galina ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Jeffries, Cynthia D. ; Detter, John C. ; Brambilla, Evelyne Marie ; Kannan, K. Palani ; Rohde, Man fred ; Spring, Stefan ; Göker, Markus ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Ivanova, Natalia. / Complete genome sequence of Cellulophaga lytica type strain (LIM-21 T). In: Standards in Genomic Sciences. 2011 ; Vol. 4, No. 2. pp. 221-232.
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