Complete genome sequence of Cellulophaga algicola type strain (IC166 T)

Birte Abt, Megan Lu, Monica Misra, Cliff Han, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan Fang Cheng, Roxane Tapia, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinikova, Amrita Pati, Amy Chen, Krishna PalaniappanMiriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. Jeffries, John C. Detter, Evelyne Brambilla, Manfred Rohde, Brian J. Tindall, Markus Göker, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Alla Lapidus

Research output: Contribution to journalArticle

18 Citations (Scopus)

Abstract

Cellulophaga algicola Bowman 2000 belongs to the family Flavobacteriaceae within the phylum 'Bacteroidetes' and was isolated from Melosira collected from the Eastern Antarctic coastal zone. The species is of interest because its members produce a wide range of extra-cellular enzymes capable of degrading proteins and polysaccharides with temperature optima of 20-30°C. This is the first completed genome sequence of a member of the genus Cellulophaga. The 4,888,353 bp long genome with its 4,285 protein-coding and 62 RNA genes consists of one circular chromosome and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)72-80
Number of pages9
JournalStandards in Genomic Sciences
Volume4
Issue number1
DOIs
StatePublished - 2011

Fingerprint

Flavobacteriaceae
Genome
Encyclopedias
Bacteroidetes
Archaea
Polysaccharides
Proteins
Chromosomes
RNA
Bacteria
Temperature
Enzymes
Genes

Keywords

  • Aerobic
  • Agarolytic
  • Chemoorganotrophic
  • Cold adapted enzymes
  • Flavobacteriaceae
  • GEBA
  • Gram-negative
  • Motile by gliding

ASJC Scopus subject areas

  • Genetics

Cite this

Abt, B., Lu, M., Misra, M., Han, C., Nolan, M., Lucas, S., ... Lapidus, A. (2011). Complete genome sequence of Cellulophaga algicola type strain (IC166 T). Standards in Genomic Sciences, 4(1), 72-80. https://doi.org/10.4056/sigs.1543845

Complete genome sequence of Cellulophaga algicola type strain (IC166 T). / Abt, Birte; Lu, Megan; Misra, Monica; Han, Cliff; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan Fang; Tapia, Roxane; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mavromatis, Konstantinos; Ovchinikova, Galina; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Detter, John C.; Brambilla, Evelyne; Rohde, Manfred; Tindall, Brian J.; Göker, Markus; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Lapidus, Alla.

In: Standards in Genomic Sciences, Vol. 4, No. 1, 2011, p. 72-80.

Research output: Contribution to journalArticle

Abt, B, Lu, M, Misra, M, Han, C, Nolan, M, Lucas, S, Hammon, N, Deshpande, S, Cheng, JF, Tapia, R, Goodwin, L, Pitluck, S, Liolios, K, Pagani, I, Ivanova, N, Mavromatis, K, Ovchinikova, G, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Detter, JC, Brambilla, E, Rohde, M, Tindall, BJ, Göker, M, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Lapidus, A 2011, 'Complete genome sequence of Cellulophaga algicola type strain (IC166 T)', Standards in Genomic Sciences, vol. 4, no. 1, pp. 72-80. https://doi.org/10.4056/sigs.1543845
Abt, Birte ; Lu, Megan ; Misra, Monica ; Han, Cliff ; Nolan, Matt ; Lucas, Susan ; Hammon, Nancy ; Deshpande, Shweta ; Cheng, Jan Fang ; Tapia, Roxane ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Pagani, Ioanna ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Ovchinikova, Galina ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Detter, John C. ; Brambilla, Evelyne ; Rohde, Manfred ; Tindall, Brian J. ; Göker, Markus ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Lapidus, Alla. / Complete genome sequence of Cellulophaga algicola type strain (IC166 T). In: Standards in Genomic Sciences. 2011 ; Vol. 4, No. 1. pp. 72-80.
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