Complete genome sequence of cellulomonas flavigena type strain (134 T)

Birte Abt, Brian Foster, Alla Lapidus, Alicia Clum, Hui Sun, Rüdiger Pukall, Susan Lucas, Tijana Glavina del Rio, Matt Nolan, Hope Tice, Jan Fang Cheng, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova, Amrita Pati, Lynne Goodwin, Amy Chen, Krishna PalaniappanMiriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. Jeffries, Manfred Rohde, Markus Göker, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk

Research output: Contribution to journalArticle

25 Citations (Scopus)

Abstract

Cellulomonas flavigena (Kellerman and McBeth 1912) Bergey et al. 1923 is the type species of the genus Cellulomonas of the actinobacterial family Cellulomonadaceae. Members of the genus Cellulomonas are of special interest for their ability to degrade cellulose and hemicel-lulose, particularly with regard to the use of biomass as an alternative energy source. Here we describe the features of this organism, together with the complete genome sequence, and an-notation. This is the first complete genome sequence of a member of the genus Cellulomonas, and next to the human pathogen Tropheryma whipplei the second complete genome se-quence within the family Cellulomonadaceae. The 4,123,179 bp long single replicon ge-nome with its 3,735 protein-coding and 53 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)15-25
Number of pages11
JournalStandards in Genomic Sciences
Volume3
Issue number1
DOIs
StatePublished - 2010

Fingerprint

Cellulomonas
Genome
Tropheryma
Encyclopedias
Replicon
Archaea
Cellulose
Biomass
RNA
Bacteria
Genes
Proteins

Keywords

  • Aerobic
  • Cellulolytic
  • Cellulomonadaceae
  • GEBA
  • Gram-positive
  • Mesophile
  • Non-motile
  • Non-sporulating
  • Xy-lan degrader

ASJC Scopus subject areas

  • Genetics

Cite this

Abt, B., Foster, B., Lapidus, A., Clum, A., Sun, H., Pukall, R., ... Klenk, H. P. (2010). Complete genome sequence of cellulomonas flavigena type strain (134 T). Standards in Genomic Sciences, 3(1), 15-25. https://doi.org/10.4056/sigs.1012662

Complete genome sequence of cellulomonas flavigena type strain (134 T). / Abt, Birte; Foster, Brian; Lapidus, Alla; Clum, Alicia; Sun, Hui; Pukall, Rüdiger; Lucas, Susan; del Rio, Tijana Glavina; Nolan, Matt; Tice, Hope; Cheng, Jan Fang; Pitluck, Sam; Liolios, Konstantinos; Ivanova, Natalia; Mavromatis, Konstantinos; Ovchinnikova, Galina; Pati, Amrita; Goodwin, Lynne; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Rohde, Manfred; Göker, Markus; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

In: Standards in Genomic Sciences, Vol. 3, No. 1, 2010, p. 15-25.

Research output: Contribution to journalArticle

Abt, B, Foster, B, Lapidus, A, Clum, A, Sun, H, Pukall, R, Lucas, S, del Rio, TG, Nolan, M, Tice, H, Cheng, JF, Pitluck, S, Liolios, K, Ivanova, N, Mavromatis, K, Ovchinnikova, G, Pati, A, Goodwin, L, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Rohde, M, Göker, M, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2010, 'Complete genome sequence of cellulomonas flavigena type strain (134 T)', Standards in Genomic Sciences, vol. 3, no. 1, pp. 15-25. https://doi.org/10.4056/sigs.1012662
Abt, Birte ; Foster, Brian ; Lapidus, Alla ; Clum, Alicia ; Sun, Hui ; Pukall, Rüdiger ; Lucas, Susan ; del Rio, Tijana Glavina ; Nolan, Matt ; Tice, Hope ; Cheng, Jan Fang ; Pitluck, Sam ; Liolios, Konstantinos ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Ovchinnikova, Galina ; Pati, Amrita ; Goodwin, Lynne ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Rohde, Manfred ; Göker, Markus ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Complete genome sequence of cellulomonas flavigena type strain (134 T). In: Standards in Genomic Sciences. 2010 ; Vol. 3, No. 1. pp. 15-25.
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AU - Clum, Alicia

AU - Sun, Hui

AU - Pukall, Rüdiger

AU - Lucas, Susan

AU - del Rio, Tijana Glavina

AU - Nolan, Matt

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Ivanova, Natalia

AU - Mavromatis, Konstantinos

AU - Ovchinnikova, Galina

AU - Pati, Amrita

AU - Goodwin, Lynne

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Rohde, Manfred

AU - Göker, Markus

AU - Woyke, Tanja

AU - Bristow, James

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

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