Complete genome sequence of capnocytophaga ochra-cea type strain (VPI 2845 T)

Konstantinos Mavrommatis, Sabine Gronow, Elizabeth Saunders, Miriam Land, Alla Lapidus, Alex Copeland, Tijana Glavina del Rio, Matt Nolan, Susan Lucas, Feng Chen, Hope Tice, Jan Fang Cheng, David Bruce, Lynne Goodwin, Sam Pitluck, Amrita Pati, Natalia Ivanova, Amy Chen, Krishna Palaniappan, Patrick ChainLoren Hauser, Yun Juan Chang, Cynthia D. Jeffries, Thomas Brettin, John C. Detter, Cliff Han, James Bristow, Markus Göker, Manfred Rohde, Jonathan A Eisen, Victor Markowitz, Nikos C. Kyrpides, Hans Peter Klenk, Philip Hugenholtz

Research output: Contribution to journalArticle

10 Citations (Scopus)

Abstract

Capnocytophaga ochracea (Prévot et al. 1956) Leadbetter et al. 1982 is the type species of the genus Capnocytophaga. It is of interest because of its location in the Flavobacteriaceae, a genomically not yet charted family within the order Flavobacteriales. The species grows as fusiform to rod shaped cells which tend to form clumps and are able to move by gliding. C. ochracea is known as a capnophilic (CO 2-requiring) organism with the ability to grow under anaerobic as well as aerobic conditions (oxygen concentration larger than 15%), here only in the presence of 5% CO 2. Strain VPI 2845 T, the type strain of the species, is portrayed in this report as a gliding, Gram-negative bacterium, originally isolated from a human oral cavity. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first completed genome sequence from the flavobacterial genus Capnocytophaga, and the 2,612,925 bp long single replicon genome with its 2193 protein-coding and 59 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)101-109
Number of pages9
JournalStandards in Genomic Sciences
Volume1
Issue number2
DOIs
StatePublished - 2009
Externally publishedYes

Fingerprint

Capnocytophaga
Genome
Carbon Monoxide
Flavobacteriaceae
Encyclopedias
Replicon
Archaea
Gram-Negative Bacteria
Mouth
RNA
Oxygen
Bacteria
Genes
Proteins

Keywords

  • Capnophilic
  • Flavobacteriaceae
  • Gingivitis
  • Gliding
  • Periodontitis

ASJC Scopus subject areas

  • Genetics

Cite this

Mavrommatis, K., Gronow, S., Saunders, E., Land, M., Lapidus, A., Copeland, A., ... Hugenholtz, P. (2009). Complete genome sequence of capnocytophaga ochra-cea type strain (VPI 2845 T). Standards in Genomic Sciences, 1(2), 101-109. https://doi.org/10.4056/sigs.15195

Complete genome sequence of capnocytophaga ochra-cea type strain (VPI 2845 T). / Mavrommatis, Konstantinos; Gronow, Sabine; Saunders, Elizabeth; Land, Miriam; Lapidus, Alla; Copeland, Alex; del Rio, Tijana Glavina; Nolan, Matt; Lucas, Susan; Chen, Feng; Tice, Hope; Cheng, Jan Fang; Bruce, David; Goodwin, Lynne; Pitluck, Sam; Pati, Amrita; Ivanova, Natalia; Chen, Amy; Palaniappan, Krishna; Chain, Patrick; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Brettin, Thomas; Detter, John C.; Han, Cliff; Bristow, James; Göker, Markus; Rohde, Manfred; Eisen, Jonathan A; Markowitz, Victor; Kyrpides, Nikos C.; Klenk, Hans Peter; Hugenholtz, Philip.

In: Standards in Genomic Sciences, Vol. 1, No. 2, 2009, p. 101-109.

Research output: Contribution to journalArticle

Mavrommatis, K, Gronow, S, Saunders, E, Land, M, Lapidus, A, Copeland, A, del Rio, TG, Nolan, M, Lucas, S, Chen, F, Tice, H, Cheng, JF, Bruce, D, Goodwin, L, Pitluck, S, Pati, A, Ivanova, N, Chen, A, Palaniappan, K, Chain, P, Hauser, L, Chang, YJ, Jeffries, CD, Brettin, T, Detter, JC, Han, C, Bristow, J, Göker, M, Rohde, M, Eisen, JA, Markowitz, V, Kyrpides, NC, Klenk, HP & Hugenholtz, P 2009, 'Complete genome sequence of capnocytophaga ochra-cea type strain (VPI 2845 T)', Standards in Genomic Sciences, vol. 1, no. 2, pp. 101-109. https://doi.org/10.4056/sigs.15195
Mavrommatis K, Gronow S, Saunders E, Land M, Lapidus A, Copeland A et al. Complete genome sequence of capnocytophaga ochra-cea type strain (VPI 2845 T). Standards in Genomic Sciences. 2009;1(2):101-109. https://doi.org/10.4056/sigs.15195
Mavrommatis, Konstantinos ; Gronow, Sabine ; Saunders, Elizabeth ; Land, Miriam ; Lapidus, Alla ; Copeland, Alex ; del Rio, Tijana Glavina ; Nolan, Matt ; Lucas, Susan ; Chen, Feng ; Tice, Hope ; Cheng, Jan Fang ; Bruce, David ; Goodwin, Lynne ; Pitluck, Sam ; Pati, Amrita ; Ivanova, Natalia ; Chen, Amy ; Palaniappan, Krishna ; Chain, Patrick ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Brettin, Thomas ; Detter, John C. ; Han, Cliff ; Bristow, James ; Göker, Markus ; Rohde, Manfred ; Eisen, Jonathan A ; Markowitz, Victor ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Hugenholtz, Philip. / Complete genome sequence of capnocytophaga ochra-cea type strain (VPI 2845 T). In: Standards in Genomic Sciences. 2009 ; Vol. 1, No. 2. pp. 101-109.
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AU - Mavrommatis, Konstantinos

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AU - Saunders, Elizabeth

AU - Land, Miriam

AU - Lapidus, Alla

AU - Copeland, Alex

AU - del Rio, Tijana Glavina

AU - Nolan, Matt

AU - Lucas, Susan

AU - Chen, Feng

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Bruce, David

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Pati, Amrita

AU - Ivanova, Natalia

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Chain, Patrick

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Brettin, Thomas

AU - Detter, John C.

AU - Han, Cliff

AU - Bristow, James

AU - Göker, Markus

AU - Rohde, Manfred

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

AU - Hugenholtz, Philip

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