Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122 T)

Miriam Land, Rüdiger Pukall, Birte Abt, Markus Göker, Manfred Rohde, Tijana Glavina del Rio, Hope Tice, Alex Copeland, Jan Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova, Amrita Pati, Amy ChenKrishna Palaniappan, Loren Hauser, Yun Juan Chang, Cynthia C. Jefferies, Elizabeth Saunders, Thomas Brettin, John C. Detter, Cliff Han, Patrick Chain, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Alla Lapidus

Research output: Contribution to journalArticle

8 Scopus citations

Abstract

Beutenbergia cavernae (Groth et al. 1999) is the type species of the genus and is of phylogenetic interest because of its isolated location in the actinobacterial suborder Micrococcineae. B. cavernae HKI 0122 T is a Gram-positive, non-motile, non-spore-forming bacterium isolated from a cave in Guangxi (China). B. cavernae grows best under aerobic conditions and shows a rod-coccus growth cycle. Its cell wall peptidoglycan contains the diagnostic L-lysine ← Lglutamate interpeptide bridge. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first completed genome sequence from the poorly populated micrococcineal family Beutenbergiaceae, and this 4,669,183 bp long single replicon genome with its 4225 protein-coding and 53 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)21-28
Number of pages8
JournalStandards in Genomic Sciences
Volume1
Issue number1
DOIs
StatePublished - 2009

Keywords

  • Actinomycete
  • Aerobic and microaerophilic
  • Mesophile
  • Micrococcineae
  • MK-8(H
  • Non-pathogenic
  • Rod-coccus growth cycle

ASJC Scopus subject areas

  • Genetics

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    Land, M., Pukall, R., Abt, B., Göker, M., Rohde, M., del Rio, T. G., Tice, H., Copeland, A., Cheng, J. F., Lucas, S., Chen, F., Nolan, M., Bruce, D., Goodwin, L., Pitluck, S., Ivanova, N., Mavromatis, K., Ovchinnikova, G., Pati, A., ... Lapidus, A. (2009). Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122 T). Standards in Genomic Sciences, 1(1), 21-28. https://doi.org/10.4056/sigs.1162