Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122 T)

Miriam Land, Rüdiger Pukall, Birte Abt, Markus Göker, Manfred Rohde, Tijana Glavina del Rio, Hope Tice, Alex Copeland, Jan Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova, Amrita Pati, Amy ChenKrishna Palaniappan, Loren Hauser, Yun Juan Chang, Cynthia C. Jefferies, Elizabeth Saunders, Thomas Brettin, John C. Detter, Cliff Han, Patrick Chain, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, Alla Lapidus

Research output: Contribution to journalArticle

8 Citations (Scopus)

Abstract

Beutenbergia cavernae (Groth et al. 1999) is the type species of the genus and is of phylogenetic interest because of its isolated location in the actinobacterial suborder Micrococcineae. B. cavernae HKI 0122 T is a Gram-positive, non-motile, non-spore-forming bacterium isolated from a cave in Guangxi (China). B. cavernae grows best under aerobic conditions and shows a rod-coccus growth cycle. Its cell wall peptidoglycan contains the diagnostic L-lysine ← Lglutamate interpeptide bridge. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first completed genome sequence from the poorly populated micrococcineal family Beutenbergiaceae, and this 4,669,183 bp long single replicon genome with its 4225 protein-coding and 53 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)21-28
Number of pages8
JournalStandards in Genomic Sciences
Volume1
Issue number1
DOIs
StatePublished - 2009

Fingerprint

Genome
Encyclopedias
Bacteria
Replicon
Peptidoglycan
Archaea
Cell Wall
Lysine
China
RNA
Growth
Genes
Proteins

Keywords

  • Actinomycete
  • Aerobic and microaerophilic
  • Mesophile
  • Micrococcineae
  • MK-8(H
  • Non-pathogenic
  • Rod-coccus growth cycle

ASJC Scopus subject areas

  • Genetics

Cite this

Land, M., Pukall, R., Abt, B., Göker, M., Rohde, M., del Rio, T. G., ... Lapidus, A. (2009). Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122 T). Standards in Genomic Sciences, 1(1), 21-28. https://doi.org/10.4056/sigs.1162

Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122 T). / Land, Miriam; Pukall, Rüdiger; Abt, Birte; Göker, Markus; Rohde, Manfred; del Rio, Tijana Glavina; Tice, Hope; Copeland, Alex; Cheng, Jan Fang; Lucas, Susan; Chen, Feng; Nolan, Matt; Bruce, David; Goodwin, Lynne; Pitluck, Sam; Ivanova, Natalia; Mavromatis, Konstantinos; Ovchinnikova, Galina; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Hauser, Loren; Chang, Yun Juan; Jefferies, Cynthia C.; Saunders, Elizabeth; Brettin, Thomas; Detter, John C.; Han, Cliff; Chain, Patrick; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Lapidus, Alla.

In: Standards in Genomic Sciences, Vol. 1, No. 1, 2009, p. 21-28.

Research output: Contribution to journalArticle

Land, M, Pukall, R, Abt, B, Göker, M, Rohde, M, del Rio, TG, Tice, H, Copeland, A, Cheng, JF, Lucas, S, Chen, F, Nolan, M, Bruce, D, Goodwin, L, Pitluck, S, Ivanova, N, Mavromatis, K, Ovchinnikova, G, Pati, A, Chen, A, Palaniappan, K, Hauser, L, Chang, YJ, Jefferies, CC, Saunders, E, Brettin, T, Detter, JC, Han, C, Chain, P, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Lapidus, A 2009, 'Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122 T)', Standards in Genomic Sciences, vol. 1, no. 1, pp. 21-28. https://doi.org/10.4056/sigs.1162
Land, Miriam ; Pukall, Rüdiger ; Abt, Birte ; Göker, Markus ; Rohde, Manfred ; del Rio, Tijana Glavina ; Tice, Hope ; Copeland, Alex ; Cheng, Jan Fang ; Lucas, Susan ; Chen, Feng ; Nolan, Matt ; Bruce, David ; Goodwin, Lynne ; Pitluck, Sam ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Ovchinnikova, Galina ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Hauser, Loren ; Chang, Yun Juan ; Jefferies, Cynthia C. ; Saunders, Elizabeth ; Brettin, Thomas ; Detter, John C. ; Han, Cliff ; Chain, Patrick ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Lapidus, Alla. / Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122 T). In: Standards in Genomic Sciences. 2009 ; Vol. 1, No. 1. pp. 21-28.
@article{16e45f48e00d40bf9f4f24531df2a1cc,
title = "Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122 T)",
abstract = "Beutenbergia cavernae (Groth et al. 1999) is the type species of the genus and is of phylogenetic interest because of its isolated location in the actinobacterial suborder Micrococcineae. B. cavernae HKI 0122 T is a Gram-positive, non-motile, non-spore-forming bacterium isolated from a cave in Guangxi (China). B. cavernae grows best under aerobic conditions and shows a rod-coccus growth cycle. Its cell wall peptidoglycan contains the diagnostic L-lysine ← Lglutamate interpeptide bridge. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first completed genome sequence from the poorly populated micrococcineal family Beutenbergiaceae, and this 4,669,183 bp long single replicon genome with its 4225 protein-coding and 53 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Actinomycete, Aerobic and microaerophilic, Mesophile, Micrococcineae, MK-8(H, Non-pathogenic, Rod-coccus growth cycle",
author = "Miriam Land and R{\"u}diger Pukall and Birte Abt and Markus G{\"o}ker and Manfred Rohde and {del Rio}, {Tijana Glavina} and Hope Tice and Alex Copeland and Cheng, {Jan Fang} and Susan Lucas and Feng Chen and Matt Nolan and David Bruce and Lynne Goodwin and Sam Pitluck and Natalia Ivanova and Konstantinos Mavromatis and Galina Ovchinnikova and Amrita Pati and Amy Chen and Krishna Palaniappan and Loren Hauser and Chang, {Yun Juan} and Jefferies, {Cynthia C.} and Elizabeth Saunders and Thomas Brettin and Detter, {John C.} and Cliff Han and Patrick Chain and James Bristow and Eisen, {Jonathan A} and Victor Markowitz and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter} and Alla Lapidus",
year = "2009",
doi = "10.4056/sigs.1162",
language = "English (US)",
volume = "1",
pages = "21--28",
journal = "Environmental Microbiomes",
issn = "1944-3277",
publisher = "BioMed Central Ltd.",
number = "1",

}

TY - JOUR

T1 - Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122 T)

AU - Land, Miriam

AU - Pukall, Rüdiger

AU - Abt, Birte

AU - Göker, Markus

AU - Rohde, Manfred

AU - del Rio, Tijana Glavina

AU - Tice, Hope

AU - Copeland, Alex

AU - Cheng, Jan Fang

AU - Lucas, Susan

AU - Chen, Feng

AU - Nolan, Matt

AU - Bruce, David

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Ivanova, Natalia

AU - Mavromatis, Konstantinos

AU - Ovchinnikova, Galina

AU - Pati, Amrita

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jefferies, Cynthia C.

AU - Saunders, Elizabeth

AU - Brettin, Thomas

AU - Detter, John C.

AU - Han, Cliff

AU - Chain, Patrick

AU - Bristow, James

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

AU - Lapidus, Alla

PY - 2009

Y1 - 2009

N2 - Beutenbergia cavernae (Groth et al. 1999) is the type species of the genus and is of phylogenetic interest because of its isolated location in the actinobacterial suborder Micrococcineae. B. cavernae HKI 0122 T is a Gram-positive, non-motile, non-spore-forming bacterium isolated from a cave in Guangxi (China). B. cavernae grows best under aerobic conditions and shows a rod-coccus growth cycle. Its cell wall peptidoglycan contains the diagnostic L-lysine ← Lglutamate interpeptide bridge. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first completed genome sequence from the poorly populated micrococcineal family Beutenbergiaceae, and this 4,669,183 bp long single replicon genome with its 4225 protein-coding and 53 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Beutenbergia cavernae (Groth et al. 1999) is the type species of the genus and is of phylogenetic interest because of its isolated location in the actinobacterial suborder Micrococcineae. B. cavernae HKI 0122 T is a Gram-positive, non-motile, non-spore-forming bacterium isolated from a cave in Guangxi (China). B. cavernae grows best under aerobic conditions and shows a rod-coccus growth cycle. Its cell wall peptidoglycan contains the diagnostic L-lysine ← Lglutamate interpeptide bridge. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first completed genome sequence from the poorly populated micrococcineal family Beutenbergiaceae, and this 4,669,183 bp long single replicon genome with its 4225 protein-coding and 53 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Actinomycete

KW - Aerobic and microaerophilic

KW - Mesophile

KW - Micrococcineae

KW - MK-8(H

KW - Non-pathogenic

KW - Rod-coccus growth cycle

UR - http://www.scopus.com/inward/record.url?scp=78649714279&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=78649714279&partnerID=8YFLogxK

U2 - 10.4056/sigs.1162

DO - 10.4056/sigs.1162

M3 - Article

C2 - 21304633

AN - SCOPUS:78649714279

VL - 1

SP - 21

EP - 28

JO - Environmental Microbiomes

JF - Environmental Microbiomes

SN - 1944-3277

IS - 1

ER -