Complete genome sequence of Atopobium parvulum type strain (IPP 1246 T)

Alex Copeland, Johannes Sikorski, Alla Lapidus, Matt Nolan, Tijana Glavina Del Rio, Susan Lucas, Feng Chen, Hope Tice, Sam Pitluck, Jan Fang Cheng, Rüdiger Pukall, Olga Chertkov, Thomas Brettin, Cliff Han, Cheryl Kuske, David Bruce, Lynne Goodwin, Natalia Ivanova, Konstantinos Mavromatis, Natalia MikhailovaAmy Chen, Krishna Palaniappan, Patrick Chain, Manfred Rohde, Markus Göker, Jim Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, John C. Detter

Research output: Contribution to journalArticle

17 Citations (Scopus)

Abstract

Atopobium parvulum (Weinberg et al. 1937) Collins and Wallbanks 1993 comb. nov. is the type strain of the species and belongs to the genomically yet unstudied Atopobium/Olsenella branch of the family Coriobacteriaceae. The species A. parvulum is of interest because its members are frequently isolated from the human oral cavity and are found to be associated with halitosis (oral malodor) but not with periodontitis. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Atopobium, and the 1,543,805 bp long single replicon genome with its 1369 protein-coding and 49 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)166-173
Number of pages8
JournalStandards in Genomic Sciences
Volume1
Issue number2
DOIs
StatePublished - 2009

Fingerprint

Genome
Halitosis
Encyclopedias
Comb and Wattles
Replicon
Periodontitis
Archaea
Mouth
RNA
Bacteria
Genes
indolepropanol phosphate
Proteins

Keywords

  • Coriobacteriaceae
  • Halitosis
  • Human respiratory tract
  • Malodor
  • Obligately anaerobic
  • Risk group 2

ASJC Scopus subject areas

  • Genetics

Cite this

Copeland, A., Sikorski, J., Lapidus, A., Nolan, M., Del Rio, T. G., Lucas, S., ... Detter, J. C. (2009). Complete genome sequence of Atopobium parvulum type strain (IPP 1246 T). Standards in Genomic Sciences, 1(2), 166-173. https://doi.org/10.4056/sigs.29547

Complete genome sequence of Atopobium parvulum type strain (IPP 1246 T). / Copeland, Alex; Sikorski, Johannes; Lapidus, Alla; Nolan, Matt; Del Rio, Tijana Glavina; Lucas, Susan; Chen, Feng; Tice, Hope; Pitluck, Sam; Cheng, Jan Fang; Pukall, Rüdiger; Chertkov, Olga; Brettin, Thomas; Han, Cliff; Kuske, Cheryl; Bruce, David; Goodwin, Lynne; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Chen, Amy; Palaniappan, Krishna; Chain, Patrick; Rohde, Manfred; Göker, Markus; Bristow, Jim; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter; Detter, John C.

In: Standards in Genomic Sciences, Vol. 1, No. 2, 2009, p. 166-173.

Research output: Contribution to journalArticle

Copeland, A, Sikorski, J, Lapidus, A, Nolan, M, Del Rio, TG, Lucas, S, Chen, F, Tice, H, Pitluck, S, Cheng, JF, Pukall, R, Chertkov, O, Brettin, T, Han, C, Kuske, C, Bruce, D, Goodwin, L, Ivanova, N, Mavromatis, K, Mikhailova, N, Chen, A, Palaniappan, K, Chain, P, Rohde, M, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC, Klenk, HP & Detter, JC 2009, 'Complete genome sequence of Atopobium parvulum type strain (IPP 1246 T)', Standards in Genomic Sciences, vol. 1, no. 2, pp. 166-173. https://doi.org/10.4056/sigs.29547
Copeland A, Sikorski J, Lapidus A, Nolan M, Del Rio TG, Lucas S et al. Complete genome sequence of Atopobium parvulum type strain (IPP 1246 T). Standards in Genomic Sciences. 2009;1(2):166-173. https://doi.org/10.4056/sigs.29547
Copeland, Alex ; Sikorski, Johannes ; Lapidus, Alla ; Nolan, Matt ; Del Rio, Tijana Glavina ; Lucas, Susan ; Chen, Feng ; Tice, Hope ; Pitluck, Sam ; Cheng, Jan Fang ; Pukall, Rüdiger ; Chertkov, Olga ; Brettin, Thomas ; Han, Cliff ; Kuske, Cheryl ; Bruce, David ; Goodwin, Lynne ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Mikhailova, Natalia ; Chen, Amy ; Palaniappan, Krishna ; Chain, Patrick ; Rohde, Manfred ; Göker, Markus ; Bristow, Jim ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter ; Detter, John C. / Complete genome sequence of Atopobium parvulum type strain (IPP 1246 T). In: Standards in Genomic Sciences. 2009 ; Vol. 1, No. 2. pp. 166-173.
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