Complete genome sequence of Atopobium parvulum type strain (IPP 1246 T)

Alex Copeland, Johannes Sikorski, Alla Lapidus, Matt Nolan, Tijana Glavina Del Rio, Susan Lucas, Feng Chen, Hope Tice, Sam Pitluck, Jan Fang Cheng, Rüdiger Pukall, Olga Chertkov, Thomas Brettin, Cliff Han, Cheryl Kuske, David Bruce, Lynne Goodwin, Natalia Ivanova, Konstantinos Mavromatis, Natalia MikhailovaAmy Chen, Krishna Palaniappan, Patrick Chain, Manfred Rohde, Markus Göker, Jim Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk, John C. Detter

Research output: Contribution to journalArticle

18 Scopus citations

Abstract

Atopobium parvulum (Weinberg et al. 1937) Collins and Wallbanks 1993 comb. nov. is the type strain of the species and belongs to the genomically yet unstudied Atopobium/Olsenella branch of the family Coriobacteriaceae. The species A. parvulum is of interest because its members are frequently isolated from the human oral cavity and are found to be associated with halitosis (oral malodor) but not with periodontitis. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Atopobium, and the 1,543,805 bp long single replicon genome with its 1369 protein-coding and 49 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)166-173
Number of pages8
JournalStandards in Genomic Sciences
Volume1
Issue number2
DOIs
StatePublished - 2009

Keywords

  • Coriobacteriaceae
  • Halitosis
  • Human respiratory tract
  • Malodor
  • Obligately anaerobic
  • Risk group 2

ASJC Scopus subject areas

  • Genetics

Fingerprint Dive into the research topics of 'Complete genome sequence of Atopobium parvulum type strain (IPP 1246 <sup>T</sup>)'. Together they form a unique fingerprint.

  • Cite this

    Copeland, A., Sikorski, J., Lapidus, A., Nolan, M., Del Rio, T. G., Lucas, S., Chen, F., Tice, H., Pitluck, S., Cheng, J. F., Pukall, R., Chertkov, O., Brettin, T., Han, C., Kuske, C., Bruce, D., Goodwin, L., Ivanova, N., Mavromatis, K., ... Detter, J. C. (2009). Complete genome sequence of Atopobium parvulum type strain (IPP 1246 T). Standards in Genomic Sciences, 1(2), 166-173. https://doi.org/10.4056/sigs.29547