Complete genome sequence of Arcobacter nitrofigilis type strain (CI T)

Amrita Pati, Sabine Gronow, Alla Lapidus, Alex Copeland, Tijana Glavina del Rio, Matt Nolan, Susan Lucas, Hope Tice, Jan Fang Cheng, Cliff Han, Olga Chertkov, David Bruce, Roxanne Tapia, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Amy Chen, Krishna PalaniappanMiriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. Jeffries, John C. Detter, Manfred Rohde, Markus Göker, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Hans Peter Klenk, Nikos C. Kyrpides

Research output: Contribution to journalArticle

26 Citations (Scopus)

Abstract

Arcobacter nitrofigilis (McClung et al. 1983) Vandamme et al. 1991 is the type species of the genus Arcobacter in the family Campylobacteraceae within the Epsilonproteobacteria. The species was first described in 1983 as Campylobacter nitrofigilis [1] after its detection as a free-living, nitrogen-fixing Campylobacter species associated with Spartina alterniflora Loisel roots [2]. It is of phylogenetic interest because of its lifestyle as a symbiotic organism in a marine environment in contrast to many other Arcobacter species which are associated with warm-blooded animals and tend to be pathogenic. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first com-plete genome sequence of a type stain of the genus Arcobacter. The 3,192,235 bp genome with its 3,154 protein-coding and 70 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)300-308
Number of pages9
JournalStandards in Genomic Sciences
Volume2
Issue number3
DOIs
StatePublished - 2010
Externally publishedYes

Fingerprint

Arcobacter
Genome
Campylobacter
Epsilonproteobacteria
Encyclopedias
Archaea
Life Style
Coloring Agents
Nitrogen
RNA
Bacteria
Genes
Proteins

Keywords

  • Campylobacteraceae
  • GEBA
  • Micro-anaerophilic
  • Motile
  • Nitrogen fixation
  • Spartina alterniflora loisel
  • Symbiotic

ASJC Scopus subject areas

  • Genetics

Cite this

Pati, A., Gronow, S., Lapidus, A., Copeland, A., del Rio, T. G., Nolan, M., ... Kyrpides, N. C. (2010). Complete genome sequence of Arcobacter nitrofigilis type strain (CI T). Standards in Genomic Sciences, 2(3), 300-308. https://doi.org/10.4056/sigs.912121

Complete genome sequence of Arcobacter nitrofigilis type strain (CI T). / Pati, Amrita; Gronow, Sabine; Lapidus, Alla; Copeland, Alex; del Rio, Tijana Glavina; Nolan, Matt; Lucas, Susan; Tice, Hope; Cheng, Jan Fang; Han, Cliff; Chertkov, Olga; Bruce, David; Tapia, Roxanne; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Ivanova, Natalia; Mavromatis, Konstantinos; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Detter, John C.; Rohde, Manfred; Göker, Markus; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans Peter; Kyrpides, Nikos C.

In: Standards in Genomic Sciences, Vol. 2, No. 3, 2010, p. 300-308.

Research output: Contribution to journalArticle

Pati, A, Gronow, S, Lapidus, A, Copeland, A, del Rio, TG, Nolan, M, Lucas, S, Tice, H, Cheng, JF, Han, C, Chertkov, O, Bruce, D, Tapia, R, Goodwin, L, Pitluck, S, Liolios, K, Ivanova, N, Mavromatis, K, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Detter, JC, Rohde, M, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Klenk, HP & Kyrpides, NC 2010, 'Complete genome sequence of Arcobacter nitrofigilis type strain (CI T)', Standards in Genomic Sciences, vol. 2, no. 3, pp. 300-308. https://doi.org/10.4056/sigs.912121
Pati A, Gronow S, Lapidus A, Copeland A, del Rio TG, Nolan M et al. Complete genome sequence of Arcobacter nitrofigilis type strain (CI T). Standards in Genomic Sciences. 2010;2(3):300-308. https://doi.org/10.4056/sigs.912121
Pati, Amrita ; Gronow, Sabine ; Lapidus, Alla ; Copeland, Alex ; del Rio, Tijana Glavina ; Nolan, Matt ; Lucas, Susan ; Tice, Hope ; Cheng, Jan Fang ; Han, Cliff ; Chertkov, Olga ; Bruce, David ; Tapia, Roxanne ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Detter, John C. ; Rohde, Manfred ; Göker, Markus ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Klenk, Hans Peter ; Kyrpides, Nikos C. / Complete genome sequence of Arcobacter nitrofigilis type strain (CI T). In: Standards in Genomic Sciences. 2010 ; Vol. 2, No. 3. pp. 300-308.
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AU - Lucas, Susan

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