Complete genome sequence of Archaeoglobus profundus type strain (AV18 T)

Mathias von Jan, Alla Lapidus, Tijana Glavina del Rio, Alex Copeland, Hope Tice, Jan Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, Lynne Goodwin, Cliff Han, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova, Olga Chertkov, Amrita Pati, Amy Chen, Krishna PalaniappanMiriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. Jeffries, Elizabeth Saunders, Thomas Brettin, John C. Detter, Patrick Chain, Konrad Eichinger, Harald Huber, Ste fan Spring, Manfred Rohde, Markus Göker, Reinhard Wirth, Tanja Woyke, Jim Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk

Research output: Contribution to journalArticle

13 Citations (Scopus)

Abstract

Archaeoglobus profundus (Burggraf et al. 1990) is a hyperthermophilic archaeon in the eu-ryarchaeal class Archaeoglobi, which is currently represented by the single family Archaeog-lobaceae, containing six validly named species and two strains ascribed to the genus 'Geoglobus' which is taxonomically challenged as the corresponding type species has no va-lidly published name. All members were isolated from marine hydrothermal habitats and are obligate anaerobes. Here we describe the features of the organism, together with the com-plete genome sequence and annotation. This is the second completed genome sequence of a member of the class Archaeoglobi. The 1,563,423 bp genome with its 1,858 protein-coding and 52 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)327-346
Number of pages20
JournalStandards in Genomic Sciences
Volume2
Issue number3
DOIs
StatePublished - 2010

Fingerprint

Archaeoglobus
Euryarchaeota
Archaea
Genome
Encyclopedias
Names
Ecosystem
RNA
Bacteria
Genes
Proteins

Keywords

  • Archaeoglobaceae
  • GEBA
  • Hydrogen utili-zation
  • Hydrothermal systems
  • Hyperthermophilic
  • Marine
  • Strictly anaerobic
  • Sulfate respiration

ASJC Scopus subject areas

  • Genetics

Cite this

von Jan, M., Lapidus, A., del Rio, T. G., Copeland, A., Tice, H., Cheng, J. F., ... Klenk, H. P. (2010). Complete genome sequence of Archaeoglobus profundus type strain (AV18 T). Standards in Genomic Sciences, 2(3), 327-346. https://doi.org/10.4056/sigs.942153

Complete genome sequence of Archaeoglobus profundus type strain (AV18 T). / von Jan, Mathias; Lapidus, Alla; del Rio, Tijana Glavina; Copeland, Alex; Tice, Hope; Cheng, Jan Fang; Lucas, Susan; Chen, Feng; Nolan, Matt; Goodwin, Lynne; Han, Cliff; Pitluck, Sam; Liolios, Konstantinos; Ivanova, Natalia; Mavromatis, Konstantinos; Ovchinnikova, Galina; Chertkov, Olga; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Saunders, Elizabeth; Brettin, Thomas; Detter, John C.; Chain, Patrick; Eichinger, Konrad; Huber, Harald; Spring, Ste fan; Rohde, Manfred; Göker, Markus; Wirth, Reinhard; Woyke, Tanja; Bristow, Jim; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

In: Standards in Genomic Sciences, Vol. 2, No. 3, 2010, p. 327-346.

Research output: Contribution to journalArticle

von Jan, M, Lapidus, A, del Rio, TG, Copeland, A, Tice, H, Cheng, JF, Lucas, S, Chen, F, Nolan, M, Goodwin, L, Han, C, Pitluck, S, Liolios, K, Ivanova, N, Mavromatis, K, Ovchinnikova, G, Chertkov, O, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Saunders, E, Brettin, T, Detter, JC, Chain, P, Eichinger, K, Huber, H, Spring, SF, Rohde, M, Göker, M, Wirth, R, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2010, 'Complete genome sequence of Archaeoglobus profundus type strain (AV18 T)', Standards in Genomic Sciences, vol. 2, no. 3, pp. 327-346. https://doi.org/10.4056/sigs.942153
von Jan M, Lapidus A, del Rio TG, Copeland A, Tice H, Cheng JF et al. Complete genome sequence of Archaeoglobus profundus type strain (AV18 T). Standards in Genomic Sciences. 2010;2(3):327-346. https://doi.org/10.4056/sigs.942153
von Jan, Mathias ; Lapidus, Alla ; del Rio, Tijana Glavina ; Copeland, Alex ; Tice, Hope ; Cheng, Jan Fang ; Lucas, Susan ; Chen, Feng ; Nolan, Matt ; Goodwin, Lynne ; Han, Cliff ; Pitluck, Sam ; Liolios, Konstantinos ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Ovchinnikova, Galina ; Chertkov, Olga ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Saunders, Elizabeth ; Brettin, Thomas ; Detter, John C. ; Chain, Patrick ; Eichinger, Konrad ; Huber, Harald ; Spring, Ste fan ; Rohde, Manfred ; Göker, Markus ; Wirth, Reinhard ; Woyke, Tanja ; Bristow, Jim ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Complete genome sequence of Archaeoglobus profundus type strain (AV18 T). In: Standards in Genomic Sciences. 2010 ; Vol. 2, No. 3. pp. 327-346.
@article{9a261ee75d0d4b8e8d9ace2666c5ab87,
title = "Complete genome sequence of Archaeoglobus profundus type strain (AV18 T)",
abstract = "Archaeoglobus profundus (Burggraf et al. 1990) is a hyperthermophilic archaeon in the eu-ryarchaeal class Archaeoglobi, which is currently represented by the single family Archaeog-lobaceae, containing six validly named species and two strains ascribed to the genus 'Geoglobus' which is taxonomically challenged as the corresponding type species has no va-lidly published name. All members were isolated from marine hydrothermal habitats and are obligate anaerobes. Here we describe the features of the organism, together with the com-plete genome sequence and annotation. This is the second completed genome sequence of a member of the class Archaeoglobi. The 1,563,423 bp genome with its 1,858 protein-coding and 52 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Archaeoglobaceae, GEBA, Hydrogen utili-zation, Hydrothermal systems, Hyperthermophilic, Marine, Strictly anaerobic, Sulfate respiration",
author = "{von Jan}, Mathias and Alla Lapidus and {del Rio}, {Tijana Glavina} and Alex Copeland and Hope Tice and Cheng, {Jan Fang} and Susan Lucas and Feng Chen and Matt Nolan and Lynne Goodwin and Cliff Han and Sam Pitluck and Konstantinos Liolios and Natalia Ivanova and Konstantinos Mavromatis and Galina Ovchinnikova and Olga Chertkov and Amrita Pati and Amy Chen and Krishna Palaniappan and Miriam Land and Loren Hauser and Chang, {Yun Juan} and Jeffries, {Cynthia D.} and Elizabeth Saunders and Thomas Brettin and Detter, {John C.} and Patrick Chain and Konrad Eichinger and Harald Huber and Spring, {Ste fan} and Manfred Rohde and Markus G{\"o}ker and Reinhard Wirth and Tanja Woyke and Jim Bristow and Eisen, {Jonathan A} and Victor Markowitz and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter}",
year = "2010",
doi = "10.4056/sigs.942153",
language = "English (US)",
volume = "2",
pages = "327--346",
journal = "Environmental Microbiomes",
issn = "1944-3277",
publisher = "BioMed Central Ltd.",
number = "3",

}

TY - JOUR

T1 - Complete genome sequence of Archaeoglobus profundus type strain (AV18 T)

AU - von Jan, Mathias

AU - Lapidus, Alla

AU - del Rio, Tijana Glavina

AU - Copeland, Alex

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Lucas, Susan

AU - Chen, Feng

AU - Nolan, Matt

AU - Goodwin, Lynne

AU - Han, Cliff

AU - Pitluck, Sam

AU - Liolios, Konstantinos

AU - Ivanova, Natalia

AU - Mavromatis, Konstantinos

AU - Ovchinnikova, Galina

AU - Chertkov, Olga

AU - Pati, Amrita

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Land, Miriam

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia D.

AU - Saunders, Elizabeth

AU - Brettin, Thomas

AU - Detter, John C.

AU - Chain, Patrick

AU - Eichinger, Konrad

AU - Huber, Harald

AU - Spring, Ste fan

AU - Rohde, Manfred

AU - Göker, Markus

AU - Wirth, Reinhard

AU - Woyke, Tanja

AU - Bristow, Jim

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

PY - 2010

Y1 - 2010

N2 - Archaeoglobus profundus (Burggraf et al. 1990) is a hyperthermophilic archaeon in the eu-ryarchaeal class Archaeoglobi, which is currently represented by the single family Archaeog-lobaceae, containing six validly named species and two strains ascribed to the genus 'Geoglobus' which is taxonomically challenged as the corresponding type species has no va-lidly published name. All members were isolated from marine hydrothermal habitats and are obligate anaerobes. Here we describe the features of the organism, together with the com-plete genome sequence and annotation. This is the second completed genome sequence of a member of the class Archaeoglobi. The 1,563,423 bp genome with its 1,858 protein-coding and 52 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Archaeoglobus profundus (Burggraf et al. 1990) is a hyperthermophilic archaeon in the eu-ryarchaeal class Archaeoglobi, which is currently represented by the single family Archaeog-lobaceae, containing six validly named species and two strains ascribed to the genus 'Geoglobus' which is taxonomically challenged as the corresponding type species has no va-lidly published name. All members were isolated from marine hydrothermal habitats and are obligate anaerobes. Here we describe the features of the organism, together with the com-plete genome sequence and annotation. This is the second completed genome sequence of a member of the class Archaeoglobi. The 1,563,423 bp genome with its 1,858 protein-coding and 52 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Archaeoglobaceae

KW - GEBA

KW - Hydrogen utili-zation

KW - Hydrothermal systems

KW - Hyperthermophilic

KW - Marine

KW - Strictly anaerobic

KW - Sulfate respiration

UR - http://www.scopus.com/inward/record.url?scp=79955013798&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=79955013798&partnerID=8YFLogxK

U2 - 10.4056/sigs.942153

DO - 10.4056/sigs.942153

M3 - Article

C2 - 21304717

AN - SCOPUS:79955013798

VL - 2

SP - 327

EP - 346

JO - Environmental Microbiomes

JF - Environmental Microbiomes

SN - 1944-3277

IS - 3

ER -