Abstract
Aminobacterium colombiense Baena et al. 1999 is the type species of the genus Aminobacte-rium. This genus is of large interest because of its isolated phylogenetic location in the family Synergistaceae, its strictly anaerobic lifestyle, and its ability to grow by fermentation of a li-mited range of amino acids but not carbohydrates. Here we describe the features of this or-ganism, together with the complete genome sequence and annotation. This is the second completed genome sequence of a member of the family Synergistaceae and the first genome sequence of a member of the genus Aminobacterium. The 1,980,592 bp long genome with its 1,914 protein-coding and 56 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
| Original language | English (US) |
|---|---|
| Pages (from-to) | 280-289 |
| Number of pages | 10 |
| Journal | Standards in Genomic Sciences |
| Volume | 2 |
| Issue number | 3 |
| DOIs | |
| State | Published - 2010 |
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Keywords
- Fermentation of amino acids
- GEBA
- Gram-negative staining
- Strictly anaerobic
- Synergistaceae
- Syntrophic organism
ASJC Scopus subject areas
- Genetics
Cite this
Complete genome sequence of Aminobacterium colombiense type strain (ALA-1 T). / Chertkov, Olga; Sikorski, Johannes; Brambilla, Evelyne; Lapidus, Alla; Copeland, Alex; del Rio, Tijana Glavina; Nolan, Matt; Lucas, Susan; Tice, Hope; Cheng, Jan Fang; Han, Cliff; Detter, John C.; Bruce, David; Tapia, Roxanne; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Ivanova, Natalia; Mavromatis, Konstantinos; Ovchinnikova, Galina; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Spring, Stefan; Rohde, Manfred; Göker, Markus; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.
In: Standards in Genomic Sciences, Vol. 2, No. 3, 2010, p. 280-289.Research output: Contribution to journal › Article
}
TY - JOUR
T1 - Complete genome sequence of Aminobacterium colombiense type strain (ALA-1 T)
AU - Chertkov, Olga
AU - Sikorski, Johannes
AU - Brambilla, Evelyne
AU - Lapidus, Alla
AU - Copeland, Alex
AU - del Rio, Tijana Glavina
AU - Nolan, Matt
AU - Lucas, Susan
AU - Tice, Hope
AU - Cheng, Jan Fang
AU - Han, Cliff
AU - Detter, John C.
AU - Bruce, David
AU - Tapia, Roxanne
AU - Goodwin, Lynne
AU - Pitluck, Sam
AU - Liolios, Konstantinos
AU - Ivanova, Natalia
AU - Mavromatis, Konstantinos
AU - Ovchinnikova, Galina
AU - Pati, Amrita
AU - Chen, Amy
AU - Palaniappan, Krishna
AU - Land, Miriam
AU - Hauser, Loren
AU - Chang, Yun Juan
AU - Jeffries, Cynthia D.
AU - Spring, Stefan
AU - Rohde, Manfred
AU - Göker, Markus
AU - Bristow, James
AU - Eisen, Jonathan A
AU - Markowitz, Victor
AU - Hugenholtz, Philip
AU - Kyrpides, Nikos C.
AU - Klenk, Hans Peter
PY - 2010
Y1 - 2010
N2 - Aminobacterium colombiense Baena et al. 1999 is the type species of the genus Aminobacte-rium. This genus is of large interest because of its isolated phylogenetic location in the family Synergistaceae, its strictly anaerobic lifestyle, and its ability to grow by fermentation of a li-mited range of amino acids but not carbohydrates. Here we describe the features of this or-ganism, together with the complete genome sequence and annotation. This is the second completed genome sequence of a member of the family Synergistaceae and the first genome sequence of a member of the genus Aminobacterium. The 1,980,592 bp long genome with its 1,914 protein-coding and 56 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
AB - Aminobacterium colombiense Baena et al. 1999 is the type species of the genus Aminobacte-rium. This genus is of large interest because of its isolated phylogenetic location in the family Synergistaceae, its strictly anaerobic lifestyle, and its ability to grow by fermentation of a li-mited range of amino acids but not carbohydrates. Here we describe the features of this or-ganism, together with the complete genome sequence and annotation. This is the second completed genome sequence of a member of the family Synergistaceae and the first genome sequence of a member of the genus Aminobacterium. The 1,980,592 bp long genome with its 1,914 protein-coding and 56 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
KW - Fermentation of amino acids
KW - GEBA
KW - Gram-negative staining
KW - Strictly anaerobic
KW - Synergistaceae
KW - Syntrophic organism
UR - http://www.scopus.com/inward/record.url?scp=80053360071&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=80053360071&partnerID=8YFLogxK
U2 - 10.4056/sigs.902116
DO - 10.4056/sigs.902116
M3 - Article
C2 - 21304712
AN - SCOPUS:80053360071
VL - 2
SP - 280
EP - 289
JO - Environmental Microbiomes
JF - Environmental Microbiomes
SN - 1944-3277
IS - 3
ER -