Complete genome sequence of Aminobacterium colombiense type strain (ALA-1 T)

Olga Chertkov; Johannes Sikorski; Evelyne Brambilla; Alla Lapidus; Alex Copeland; Tijana Glavina del Rio; Matt Nolan; Susan Lucas; Hope Tice; Jan Fang Cheng; Cliff Han; John C. Detter; David Bruce; Roxanne Tapia; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Galina Ovchinnikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun Juan Chang; Cynthia D. Jeffries; Stefan Spring; Manfred Rohde; Markus Göker; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C. Kyrpides; Hans Peter Klenk

doi:10.4056/sigs.902116

Complete genome sequence of Aminobacterium colombiense type strain (ALA-1 ^T)

Olga Chertkov, Johannes Sikorski, Evelyne Brambilla, Alla Lapidus, Alex Copeland, Tijana Glavina del Rio, Matt Nolan, Susan Lucas, Hope Tice, Jan Fang Cheng, Cliff Han, John C. Detter, David Bruce, Roxanne Tapia, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Galina OvchinnikovaAmrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. Jeffries, Stefan Spring, Manfred Rohde, Markus Göker, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk

Medical Microbiology and Immunology

Research output: Contribution to journal › Article › peer-review

25 Scopus citations

Abstract

Aminobacterium colombiense Baena et al. 1999 is the type species of the genus Aminobacte-rium. This genus is of large interest because of its isolated phylogenetic location in the family Synergistaceae, its strictly anaerobic lifestyle, and its ability to grow by fermentation of a li-mited range of amino acids but not carbohydrates. Here we describe the features of this or-ganism, together with the complete genome sequence and annotation. This is the second completed genome sequence of a member of the family Synergistaceae and the first genome sequence of a member of the genus Aminobacterium. The 1,980,592 bp long genome with its 1,914 protein-coding and 56 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original language	English (US)
Pages (from-to)	280-289
Number of pages	10
Journal	Standards in Genomic Sciences
Volume	2
Issue number	3
DOIs	https://doi.org/10.4056/sigs.902116
State	Published - 2010

Keywords

Fermentation of amino acids
GEBA
Gram-negative staining
Strictly anaerobic
Synergistaceae
Syntrophic organism

ASJC Scopus subject areas

Genetics

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10.4056/sigs.902116

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Chertkov, O., Sikorski, J., Brambilla, E., Lapidus, A., Copeland, A., del Rio, T. G., Nolan, M., Lucas, S., Tice, H., Cheng, J. F., Han, C., Detter, J. C., Bruce, D., Tapia, R., Goodwin, L., Pitluck, S., Liolios, K., Ivanova, N., Mavromatis, K., ... Klenk, H. P. (2010). Complete genome sequence of Aminobacterium colombiense type strain (ALA-1 ^T). Standards in Genomic Sciences, 2(3), 280-289. https://doi.org/10.4056/sigs.902116

Complete genome sequence of Aminobacterium colombiense type strain (ALA-1 ^T). / Chertkov, Olga; Sikorski, Johannes; Brambilla, Evelyne; Lapidus, Alla; Copeland, Alex; del Rio, Tijana Glavina; Nolan, Matt; Lucas, Susan; Tice, Hope; Cheng, Jan Fang; Han, Cliff; Detter, John C.; Bruce, David; Tapia, Roxanne; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Ivanova, Natalia; Mavromatis, Konstantinos; Ovchinnikova, Galina; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Spring, Stefan; Rohde, Manfred; Göker, Markus; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

In: Standards in Genomic Sciences, Vol. 2, No. 3, 2010, p. 280-289.

Research output: Contribution to journal › Article › peer-review

Chertkov, O, Sikorski, J, Brambilla, E, Lapidus, A, Copeland, A, del Rio, TG, Nolan, M, Lucas, S, Tice, H, Cheng, JF, Han, C, Detter, JC, Bruce, D, Tapia, R, Goodwin, L, Pitluck, S, Liolios, K, Ivanova, N, Mavromatis, K, Ovchinnikova, G, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Spring, S, Rohde, M, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2010, 'Complete genome sequence of Aminobacterium colombiense type strain (ALA-1 ^T)', Standards in Genomic Sciences, vol. 2, no. 3, pp. 280-289. https://doi.org/10.4056/sigs.902116

Chertkov, Olga ; Sikorski, Johannes ; Brambilla, Evelyne ; Lapidus, Alla ; Copeland, Alex ; del Rio, Tijana Glavina ; Nolan, Matt ; Lucas, Susan ; Tice, Hope ; Cheng, Jan Fang ; Han, Cliff ; Detter, John C. ; Bruce, David ; Tapia, Roxanne ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Ovchinnikova, Galina ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Spring, Stefan ; Rohde, Manfred ; Göker, Markus ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Complete genome sequence of Aminobacterium colombiense type strain (ALA-1 ^T). In: Standards in Genomic Sciences. 2010 ; Vol. 2, No. 3. pp. 280-289.

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