Complete genome sequence of Aminobacterium colombiense type strain (ALA-1 T)

Olga Chertkov, Johannes Sikorski, Evelyne Brambilla, Alla Lapidus, Alex Copeland, Tijana Glavina del Rio, Matt Nolan, Susan Lucas, Hope Tice, Jan Fang Cheng, Cliff Han, John C. Detter, David Bruce, Roxanne Tapia, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Galina OvchinnikovaAmrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. Jeffries, Stefan Spring, Manfred Rohde, Markus Göker, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk

Research output: Contribution to journalArticle

19 Citations (Scopus)

Abstract

Aminobacterium colombiense Baena et al. 1999 is the type species of the genus Aminobacte-rium. This genus is of large interest because of its isolated phylogenetic location in the family Synergistaceae, its strictly anaerobic lifestyle, and its ability to grow by fermentation of a li-mited range of amino acids but not carbohydrates. Here we describe the features of this or-ganism, together with the complete genome sequence and annotation. This is the second completed genome sequence of a member of the family Synergistaceae and the first genome sequence of a member of the genus Aminobacterium. The 1,980,592 bp long genome with its 1,914 protein-coding and 56 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)280-289
Number of pages10
JournalStandards in Genomic Sciences
Volume2
Issue number3
DOIs
StatePublished - 2010

Fingerprint

Genome
Encyclopedias
Aptitude
Archaea
Fermentation
Life Style
Carbohydrates
RNA
Bacteria
Amino Acids
Genes
Proteins

Keywords

  • Fermentation of amino acids
  • GEBA
  • Gram-negative staining
  • Strictly anaerobic
  • Synergistaceae
  • Syntrophic organism

ASJC Scopus subject areas

  • Genetics

Cite this

Chertkov, O., Sikorski, J., Brambilla, E., Lapidus, A., Copeland, A., del Rio, T. G., ... Klenk, H. P. (2010). Complete genome sequence of Aminobacterium colombiense type strain (ALA-1 T). Standards in Genomic Sciences, 2(3), 280-289. https://doi.org/10.4056/sigs.902116

Complete genome sequence of Aminobacterium colombiense type strain (ALA-1 T). / Chertkov, Olga; Sikorski, Johannes; Brambilla, Evelyne; Lapidus, Alla; Copeland, Alex; del Rio, Tijana Glavina; Nolan, Matt; Lucas, Susan; Tice, Hope; Cheng, Jan Fang; Han, Cliff; Detter, John C.; Bruce, David; Tapia, Roxanne; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Ivanova, Natalia; Mavromatis, Konstantinos; Ovchinnikova, Galina; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Spring, Stefan; Rohde, Manfred; Göker, Markus; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

In: Standards in Genomic Sciences, Vol. 2, No. 3, 2010, p. 280-289.

Research output: Contribution to journalArticle

Chertkov, O, Sikorski, J, Brambilla, E, Lapidus, A, Copeland, A, del Rio, TG, Nolan, M, Lucas, S, Tice, H, Cheng, JF, Han, C, Detter, JC, Bruce, D, Tapia, R, Goodwin, L, Pitluck, S, Liolios, K, Ivanova, N, Mavromatis, K, Ovchinnikova, G, Pati, A, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Spring, S, Rohde, M, Göker, M, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2010, 'Complete genome sequence of Aminobacterium colombiense type strain (ALA-1 T)', Standards in Genomic Sciences, vol. 2, no. 3, pp. 280-289. https://doi.org/10.4056/sigs.902116
Chertkov O, Sikorski J, Brambilla E, Lapidus A, Copeland A, del Rio TG et al. Complete genome sequence of Aminobacterium colombiense type strain (ALA-1 T). Standards in Genomic Sciences. 2010;2(3):280-289. https://doi.org/10.4056/sigs.902116
Chertkov, Olga ; Sikorski, Johannes ; Brambilla, Evelyne ; Lapidus, Alla ; Copeland, Alex ; del Rio, Tijana Glavina ; Nolan, Matt ; Lucas, Susan ; Tice, Hope ; Cheng, Jan Fang ; Han, Cliff ; Detter, John C. ; Bruce, David ; Tapia, Roxanne ; Goodwin, Lynne ; Pitluck, Sam ; Liolios, Konstantinos ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Ovchinnikova, Galina ; Pati, Amrita ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Spring, Stefan ; Rohde, Manfred ; Göker, Markus ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Complete genome sequence of Aminobacterium colombiense type strain (ALA-1 T). In: Standards in Genomic Sciences. 2010 ; Vol. 2, No. 3. pp. 280-289.
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