Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA T)

Konstantinos Mavromatis, Johannes Sikorski, Alla Lapidus, Tijana Glavina del Rio, Alex Copeland, Hope Tice, Jan Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Galina Ovchinnikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren HauserYun Juan Chang, Cynthia D. Jeffries, Patrick Chain, Linda Meincke, David Sims, Olga Chertkov, Cliff Han, Thomas Brettin, John C. Detter, Claudia Wahrenburg, Manfred Rohde, Rüdiger Pukall, Markus Göker, Jim Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Hans Peter Klenk, Nikos C. Kyrpides

Research output: Contribution to journalArticle

17 Scopus citations

Abstract

Alicyclobacillus acidocaldarius (Darland and Brock 1971) is the type species of the larger of the two genera in the bacillal family 'Alicyclobacillaceae'. A. acidocaldarius is a free-living and non-pathogenic organism, but may also be associated with food and fruit spoilage. Due to its acidophilic nature, several enzymes from this species have since long been subjected to detailed molecular and biochemical studies. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of the family 'Alicyclobacillaceae'. The 3,205,686 bp long genome (chromosome and three plasmids) with its 3,153 protein-coding and 82 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)9-18
Number of pages10
JournalStandards in Genomic Sciences
Volume2
Issue number1
DOIs
StatePublished - 2010

Keywords

  • Acidophilic
  • Aerobic
  • Food spoilage
  • GEBA
  • Non-motile but encodes flagellar genes
  • Non-pathogenic
  • Thermophile

ASJC Scopus subject areas

  • Genetics

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    Mavromatis, K., Sikorski, J., Lapidus, A., del Rio, T. G., Copeland, A., Tice, H., Cheng, J. F., Lucas, S., Chen, F., Nolan, M., Bruce, D., Goodwin, L., Pitluck, S., Ivanova, N., Ovchinnikova, G., Pati, A., Chen, A., Palaniappan, K., Land, M., ... Kyrpides, N. C. (2010). Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA T). Standards in Genomic Sciences, 2(1), 9-18. https://doi.org/10.4056/sigs.591104