Complete genome sequence of Actinosynnema mirum type strain (101 T)

Miriam Land, Alla Lapidus, Shanmugam Mayilraj, Feng Chen, Alex Copeland, Tijana Glavina del Rio, Matt Nolan, Susan Lucas, Hope Tice, Jan Fang Cheng, Olga Chertkov, David Bruce, Lynne Goodwin, Sam Pitluck, Manfred Rohde, Markus Göker, Amrita Pati, Natalia Ivanova, Konstantinos Mavromatis, Amy ChenKrishna Palaniappan, Loren Hauser, Yun Juan Chang, Cynthia C. Jeffries, Thomas Brettin, John C. Detter, Cliff Han, Patrick Chain, Brian J. Tindall, Jim Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk

Research output: Contribution to journalArticle

28 Citations (Scopus)

Abstract

Actinosynnema mirum Hasegawa et al. 1978 is the type species of the genus, and is of phylogenetic interest because of its central phylogenetic location in the Actino- synnemataceae, a rapidly growing family within the actinobacterial suborder Pseudo- nocardineae. A. mirum is characterized by its motile spores borne on synnemata and as a producer of nocardicin antibiotics. It is capable of growing aerobically and under a moderate CO 2 atmosphere. The strain is a Gram-positive, aerial and substrate mycelium producing bacterium, originally isolated from a grass blade collected from the Raritan River, New Jersey. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first complete genome sequence of a member of the family Actinosynnemataceae, and only the second sequence from the actinobacterial suborder Pseudonocardineae. The 8,248,144 bp long single replicon genome with its 7100 protein- coding and 77 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original languageEnglish (US)
Pages (from-to)46-53
Number of pages8
JournalStandards in Genomic Sciences
Volume1
Issue number1
DOIs
StatePublished - 2009

Fingerprint

Genome
Encyclopedias
Bacteria
Replicon
Mycelium
Archaea
Carbon Monoxide
Poaceae
Spores
Atmosphere
Rivers
RNA
Anti-Bacterial Agents
Genes
Proteins
nocardicin

Keywords

  • Actinosynnemataceae
  • Aerial and substrate mycelium
  • Aerobic
  • Mesophile
  • Motile spores
  • Nocardicin a producer
  • Soluble pigments
  • Synnemata

ASJC Scopus subject areas

  • Genetics

Cite this

Land, M., Lapidus, A., Mayilraj, S., Chen, F., Copeland, A., del Rio, T. G., ... Klenk, H. P. (2009). Complete genome sequence of Actinosynnema mirum type strain (101 T). Standards in Genomic Sciences, 1(1), 46-53. https://doi.org/10.4056/sigs.21137

Complete genome sequence of Actinosynnema mirum type strain (101 T). / Land, Miriam; Lapidus, Alla; Mayilraj, Shanmugam; Chen, Feng; Copeland, Alex; del Rio, Tijana Glavina; Nolan, Matt; Lucas, Susan; Tice, Hope; Cheng, Jan Fang; Chertkov, Olga; Bruce, David; Goodwin, Lynne; Pitluck, Sam; Rohde, Manfred; Göker, Markus; Pati, Amrita; Ivanova, Natalia; Mavromatis, Konstantinos; Chen, Amy; Palaniappan, Krishna; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia C.; Brettin, Thomas; Detter, John C.; Han, Cliff; Chain, Patrick; Tindall, Brian J.; Bristow, Jim; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

In: Standards in Genomic Sciences, Vol. 1, No. 1, 2009, p. 46-53.

Research output: Contribution to journalArticle

Land, M, Lapidus, A, Mayilraj, S, Chen, F, Copeland, A, del Rio, TG, Nolan, M, Lucas, S, Tice, H, Cheng, JF, Chertkov, O, Bruce, D, Goodwin, L, Pitluck, S, Rohde, M, Göker, M, Pati, A, Ivanova, N, Mavromatis, K, Chen, A, Palaniappan, K, Hauser, L, Chang, YJ, Jeffries, CC, Brettin, T, Detter, JC, Han, C, Chain, P, Tindall, BJ, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2009, 'Complete genome sequence of Actinosynnema mirum type strain (101 T)', Standards in Genomic Sciences, vol. 1, no. 1, pp. 46-53. https://doi.org/10.4056/sigs.21137
Land M, Lapidus A, Mayilraj S, Chen F, Copeland A, del Rio TG et al. Complete genome sequence of Actinosynnema mirum type strain (101 T). Standards in Genomic Sciences. 2009;1(1):46-53. https://doi.org/10.4056/sigs.21137
Land, Miriam ; Lapidus, Alla ; Mayilraj, Shanmugam ; Chen, Feng ; Copeland, Alex ; del Rio, Tijana Glavina ; Nolan, Matt ; Lucas, Susan ; Tice, Hope ; Cheng, Jan Fang ; Chertkov, Olga ; Bruce, David ; Goodwin, Lynne ; Pitluck, Sam ; Rohde, Manfred ; Göker, Markus ; Pati, Amrita ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Chen, Amy ; Palaniappan, Krishna ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia C. ; Brettin, Thomas ; Detter, John C. ; Han, Cliff ; Chain, Patrick ; Tindall, Brian J. ; Bristow, Jim ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Complete genome sequence of Actinosynnema mirum type strain (101 T). In: Standards in Genomic Sciences. 2009 ; Vol. 1, No. 1. pp. 46-53.
@article{0f3b024f53d543ce87bc07508c08b264,
title = "Complete genome sequence of Actinosynnema mirum type strain (101 T)",
abstract = "Actinosynnema mirum Hasegawa et al. 1978 is the type species of the genus, and is of phylogenetic interest because of its central phylogenetic location in the Actino- synnemataceae, a rapidly growing family within the actinobacterial suborder Pseudo- nocardineae. A. mirum is characterized by its motile spores borne on synnemata and as a producer of nocardicin antibiotics. It is capable of growing aerobically and under a moderate CO 2 atmosphere. The strain is a Gram-positive, aerial and substrate mycelium producing bacterium, originally isolated from a grass blade collected from the Raritan River, New Jersey. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first complete genome sequence of a member of the family Actinosynnemataceae, and only the second sequence from the actinobacterial suborder Pseudonocardineae. The 8,248,144 bp long single replicon genome with its 7100 protein- coding and 77 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.",
keywords = "Actinosynnemataceae, Aerial and substrate mycelium, Aerobic, Mesophile, Motile spores, Nocardicin a producer, Soluble pigments, Synnemata",
author = "Miriam Land and Alla Lapidus and Shanmugam Mayilraj and Feng Chen and Alex Copeland and {del Rio}, {Tijana Glavina} and Matt Nolan and Susan Lucas and Hope Tice and Cheng, {Jan Fang} and Olga Chertkov and David Bruce and Lynne Goodwin and Sam Pitluck and Manfred Rohde and Markus G{\"o}ker and Amrita Pati and Natalia Ivanova and Konstantinos Mavromatis and Amy Chen and Krishna Palaniappan and Loren Hauser and Chang, {Yun Juan} and Jeffries, {Cynthia C.} and Thomas Brettin and Detter, {John C.} and Cliff Han and Patrick Chain and Tindall, {Brian J.} and Jim Bristow and Eisen, {Jonathan A} and Victor Markowitz and Philip Hugenholtz and Kyrpides, {Nikos C.} and Klenk, {Hans Peter}",
year = "2009",
doi = "10.4056/sigs.21137",
language = "English (US)",
volume = "1",
pages = "46--53",
journal = "Environmental Microbiomes",
issn = "1944-3277",
publisher = "BioMed Central Ltd.",
number = "1",

}

TY - JOUR

T1 - Complete genome sequence of Actinosynnema mirum type strain (101 T)

AU - Land, Miriam

AU - Lapidus, Alla

AU - Mayilraj, Shanmugam

AU - Chen, Feng

AU - Copeland, Alex

AU - del Rio, Tijana Glavina

AU - Nolan, Matt

AU - Lucas, Susan

AU - Tice, Hope

AU - Cheng, Jan Fang

AU - Chertkov, Olga

AU - Bruce, David

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Rohde, Manfred

AU - Göker, Markus

AU - Pati, Amrita

AU - Ivanova, Natalia

AU - Mavromatis, Konstantinos

AU - Chen, Amy

AU - Palaniappan, Krishna

AU - Hauser, Loren

AU - Chang, Yun Juan

AU - Jeffries, Cynthia C.

AU - Brettin, Thomas

AU - Detter, John C.

AU - Han, Cliff

AU - Chain, Patrick

AU - Tindall, Brian J.

AU - Bristow, Jim

AU - Eisen, Jonathan A

AU - Markowitz, Victor

AU - Hugenholtz, Philip

AU - Kyrpides, Nikos C.

AU - Klenk, Hans Peter

PY - 2009

Y1 - 2009

N2 - Actinosynnema mirum Hasegawa et al. 1978 is the type species of the genus, and is of phylogenetic interest because of its central phylogenetic location in the Actino- synnemataceae, a rapidly growing family within the actinobacterial suborder Pseudo- nocardineae. A. mirum is characterized by its motile spores borne on synnemata and as a producer of nocardicin antibiotics. It is capable of growing aerobically and under a moderate CO 2 atmosphere. The strain is a Gram-positive, aerial and substrate mycelium producing bacterium, originally isolated from a grass blade collected from the Raritan River, New Jersey. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first complete genome sequence of a member of the family Actinosynnemataceae, and only the second sequence from the actinobacterial suborder Pseudonocardineae. The 8,248,144 bp long single replicon genome with its 7100 protein- coding and 77 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

AB - Actinosynnema mirum Hasegawa et al. 1978 is the type species of the genus, and is of phylogenetic interest because of its central phylogenetic location in the Actino- synnemataceae, a rapidly growing family within the actinobacterial suborder Pseudo- nocardineae. A. mirum is characterized by its motile spores borne on synnemata and as a producer of nocardicin antibiotics. It is capable of growing aerobically and under a moderate CO 2 atmosphere. The strain is a Gram-positive, aerial and substrate mycelium producing bacterium, originally isolated from a grass blade collected from the Raritan River, New Jersey. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first complete genome sequence of a member of the family Actinosynnemataceae, and only the second sequence from the actinobacterial suborder Pseudonocardineae. The 8,248,144 bp long single replicon genome with its 7100 protein- coding and 77 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

KW - Actinosynnemataceae

KW - Aerial and substrate mycelium

KW - Aerobic

KW - Mesophile

KW - Motile spores

KW - Nocardicin a producer

KW - Soluble pigments

KW - Synnemata

UR - http://www.scopus.com/inward/record.url?scp=78649840698&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=78649840698&partnerID=8YFLogxK

U2 - 10.4056/sigs.21137

DO - 10.4056/sigs.21137

M3 - Article

C2 - 21304636

AN - SCOPUS:78649840698

VL - 1

SP - 46

EP - 53

JO - Environmental Microbiomes

JF - Environmental Microbiomes

SN - 1944-3277

IS - 1

ER -