Complete genome sequence of acetohalobium Arabaticum type strain (Z-7288 T)

Johannes Sikorski; Alla Lapidus; Olga Chertkov; Susan Lucas; Alex Copeland; Tijana Glavina del Rio; Matt Nolan; Hope Tice; Jan Fang Cheng; Cliff Han; Evelyne Brambilla; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; David Bruce; Chris Detter; Roxanne Tapia; Lynne Goodwin; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun Juan Chang; Cynthia D. Jeffries; Manfred Rohde; Markus Göker; Stefan Spring; Tanja Woyke; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C. Kyrpides; Hans Peter Klenk

doi:10.4056/sigs.1062906

Complete genome sequence of acetohalobium Arabaticum type strain (Z-7288 ^T)

Johannes Sikorski, Alla Lapidus, Olga Chertkov, Susan Lucas, Alex Copeland, Tijana Glavina del Rio, Matt Nolan, Hope Tice, Jan Fang Cheng, Cliff Han, Evelyne Brambilla, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, David Bruce, Chris Detter, Roxanne TapiaLynne Goodwin, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. Jeffries, Manfred Rohde, Markus Göker, Stefan Spring, Tanja Woyke, James Bristow, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk

Medical Microbiology and Immunology

Research output: Contribution to journal › Article › peer-review

13 Scopus citations

Abstract

Acetohalobium arabaticum Zhilina and Zavarzin 1990 is of special interest because of its physiology and its participation in the anaerobic C ₁-trophic chain in hypersaline environ-ments. This is the first completed genome sequence of the family Halobacteroidaceae and only the second genome sequence in the order Halanaerobiales. The 2,469,596 bp long ge-nome with its 2,353 protein-coding and 90 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Original language	English (US)
Pages (from-to)	57-65
Number of pages	9
Journal	Standards in Genomic Sciences
Volume	3
Issue number	1
DOIs	https://doi.org/10.4056/sigs.1062906
State	Published - 2010

Keywords

Anaerobe
Chemolithotroph
Clostridia
Consumption of trimethylamine
Degradation of betaine
GEBA
Halanae-robiales
Halophile
Homoacetogen
Mesophile
Methylotroph
Organotroph

ASJC Scopus subject areas

Genetics

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10.4056/sigs.1062906

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Sikorski, J., Lapidus, A., Chertkov, O., Lucas, S., Copeland, A., del Rio, T. G., Nolan, M., Tice, H., Cheng, J. F., Han, C., Brambilla, E., Pitluck, S., Liolios, K., Ivanova, N., Mavromatis, K., Mikhailova, N., Pati, A., Bruce, D., Detter, C., ... Klenk, H. P. (2010). Complete genome sequence of acetohalobium Arabaticum type strain (Z-7288 ^T). Standards in Genomic Sciences, 3(1), 57-65. https://doi.org/10.4056/sigs.1062906

Complete genome sequence of acetohalobium Arabaticum type strain (Z-7288 ^T). / Sikorski, Johannes; Lapidus, Alla; Chertkov, Olga; Lucas, Susan; Copeland, Alex; del Rio, Tijana Glavina; Nolan, Matt; Tice, Hope; Cheng, Jan Fang; Han, Cliff; Brambilla, Evelyne; Pitluck, Sam; Liolios, Konstantinos; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Bruce, David; Detter, Chris; Tapia, Roxanne; Goodwin, Lynne; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun Juan; Jeffries, Cynthia D.; Rohde, Manfred; Göker, Markus; Spring, Stefan; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans Peter.

In: Standards in Genomic Sciences, Vol. 3, No. 1, 2010, p. 57-65.

Research output: Contribution to journal › Article › peer-review

Sikorski, J, Lapidus, A, Chertkov, O, Lucas, S, Copeland, A, del Rio, TG, Nolan, M, Tice, H, Cheng, JF, Han, C, Brambilla, E, Pitluck, S, Liolios, K, Ivanova, N, Mavromatis, K, Mikhailova, N, Pati, A, Bruce, D, Detter, C, Tapia, R, Goodwin, L, Chen, A, Palaniappan, K, Land, M, Hauser, L, Chang, YJ, Jeffries, CD, Rohde, M, Göker, M, Spring, S, Woyke, T, Bristow, J, Eisen, JA, Markowitz, V, Hugenholtz, P, Kyrpides, NC & Klenk, HP 2010, 'Complete genome sequence of acetohalobium Arabaticum type strain (Z-7288 ^T)', Standards in Genomic Sciences, vol. 3, no. 1, pp. 57-65. https://doi.org/10.4056/sigs.1062906

Sikorski, Johannes ; Lapidus, Alla ; Chertkov, Olga ; Lucas, Susan ; Copeland, Alex ; del Rio, Tijana Glavina ; Nolan, Matt ; Tice, Hope ; Cheng, Jan Fang ; Han, Cliff ; Brambilla, Evelyne ; Pitluck, Sam ; Liolios, Konstantinos ; Ivanova, Natalia ; Mavromatis, Konstantinos ; Mikhailova, Natalia ; Pati, Amrita ; Bruce, David ; Detter, Chris ; Tapia, Roxanne ; Goodwin, Lynne ; Chen, Amy ; Palaniappan, Krishna ; Land, Miriam ; Hauser, Loren ; Chang, Yun Juan ; Jeffries, Cynthia D. ; Rohde, Manfred ; Göker, Markus ; Spring, Stefan ; Woyke, Tanja ; Bristow, James ; Eisen, Jonathan A ; Markowitz, Victor ; Hugenholtz, Philip ; Kyrpides, Nikos C. ; Klenk, Hans Peter. / Complete genome sequence of acetohalobium Arabaticum type strain (Z-7288 ^T). In: Standards in Genomic Sciences. 2010 ; Vol. 3, No. 1. pp. 57-65.

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