Attenuation of RNA polymerase II pausing mitigates BRCA1-associated R-loop accumulation and tumorigenesis

Xiaowen Zhang, Huai Chin Chiang, Yao Wang, Chi Zhang, Sabrina Smith, Xiayan Zhao, Sreejith J. Nair, Joel Michalek, Ismail Jatoi, Meeghan Lautner, Boyce Oliver, Howard Wang, Anna Petit, Teresa Soler, Joan Brunet, Francesca Mateo, Miguel Angel Pujana, Elizabeth Poggi, Krysta Chaldekas, Claudine IsaacsBeth N. Peshkin, Oscar Ochoa, Frederic Chedin, Constantine Theoharis, Lu Zhe Sun, Tyler J. Curiel, Richard Elledge, Victor X. Jin, Yanfen Hu, Rong Li

Research output: Contribution to journalArticle

26 Citations (Scopus)

Abstract

Most BRCA1-associated breast tumours are basal-like yet originate from luminal progenitors. BRCA1 is best known for its functions in double-strand break repair and resolution of DNA replication stress. However, it is unclear whether loss of these ubiquitously important functions fully explains the cell lineage-specific tumorigenesis. In vitro studies implicate BRCA1 in elimination of R-loops, DNA-RNA hybrid structures involved in transcription and genetic instability. Here we show that R-loops accumulate preferentially in breast luminal epithelial cells, not in basal epithelial or stromal cells, of BRCA1 mutation carriers. Furthermore, R-loops are enriched at the 5′ end of those genes with promoter-proximal RNA polymerase II (Pol II) pausing. Genetic ablation of Cobra1, which encodes a Pol II-pausing and BRCA1-binding protein, ameliorates R-loop accumulation and reduces tumorigenesis in Brca1-knockout mouse mammary epithelium. Our studies show that Pol II pausing is an important contributor to BRCA1-associated R-loop accumulation and breast cancer development.

Original languageEnglish (US)
Article number15908
JournalNature Communications
Volume8
DOIs
StatePublished - Jun 26 2017

Fingerprint

RNA Polymerase II
Carcinogenesis
Breast
attenuation
Epithelial Cells
BRCA1 Protein
Genetic Transcription
Breast Neoplasms
breast
DNA
Cell Lineage
Transcription
Stromal Cells
Ablation
DNA Replication
Knockout Mice
Tumors
Carrier Proteins
Repair
Epithelium

ASJC Scopus subject areas

  • Chemistry(all)
  • Biochemistry, Genetics and Molecular Biology(all)
  • Physics and Astronomy(all)

Cite this

Attenuation of RNA polymerase II pausing mitigates BRCA1-associated R-loop accumulation and tumorigenesis. / Zhang, Xiaowen; Chiang, Huai Chin; Wang, Yao; Zhang, Chi; Smith, Sabrina; Zhao, Xiayan; Nair, Sreejith J.; Michalek, Joel; Jatoi, Ismail; Lautner, Meeghan; Oliver, Boyce; Wang, Howard; Petit, Anna; Soler, Teresa; Brunet, Joan; Mateo, Francesca; Angel Pujana, Miguel; Poggi, Elizabeth; Chaldekas, Krysta; Isaacs, Claudine; Peshkin, Beth N.; Ochoa, Oscar; Chedin, Frederic; Theoharis, Constantine; Sun, Lu Zhe; Curiel, Tyler J.; Elledge, Richard; Jin, Victor X.; Hu, Yanfen; Li, Rong.

In: Nature Communications, Vol. 8, 15908, 26.06.2017.

Research output: Contribution to journalArticle

Zhang, X, Chiang, HC, Wang, Y, Zhang, C, Smith, S, Zhao, X, Nair, SJ, Michalek, J, Jatoi, I, Lautner, M, Oliver, B, Wang, H, Petit, A, Soler, T, Brunet, J, Mateo, F, Angel Pujana, M, Poggi, E, Chaldekas, K, Isaacs, C, Peshkin, BN, Ochoa, O, Chedin, F, Theoharis, C, Sun, LZ, Curiel, TJ, Elledge, R, Jin, VX, Hu, Y & Li, R 2017, 'Attenuation of RNA polymerase II pausing mitigates BRCA1-associated R-loop accumulation and tumorigenesis', Nature Communications, vol. 8, 15908. https://doi.org/10.1038/ncomms15908
Zhang, Xiaowen ; Chiang, Huai Chin ; Wang, Yao ; Zhang, Chi ; Smith, Sabrina ; Zhao, Xiayan ; Nair, Sreejith J. ; Michalek, Joel ; Jatoi, Ismail ; Lautner, Meeghan ; Oliver, Boyce ; Wang, Howard ; Petit, Anna ; Soler, Teresa ; Brunet, Joan ; Mateo, Francesca ; Angel Pujana, Miguel ; Poggi, Elizabeth ; Chaldekas, Krysta ; Isaacs, Claudine ; Peshkin, Beth N. ; Ochoa, Oscar ; Chedin, Frederic ; Theoharis, Constantine ; Sun, Lu Zhe ; Curiel, Tyler J. ; Elledge, Richard ; Jin, Victor X. ; Hu, Yanfen ; Li, Rong. / Attenuation of RNA polymerase II pausing mitigates BRCA1-associated R-loop accumulation and tumorigenesis. In: Nature Communications. 2017 ; Vol. 8.
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abstract = "Most BRCA1-associated breast tumours are basal-like yet originate from luminal progenitors. BRCA1 is best known for its functions in double-strand break repair and resolution of DNA replication stress. However, it is unclear whether loss of these ubiquitously important functions fully explains the cell lineage-specific tumorigenesis. In vitro studies implicate BRCA1 in elimination of R-loops, DNA-RNA hybrid structures involved in transcription and genetic instability. Here we show that R-loops accumulate preferentially in breast luminal epithelial cells, not in basal epithelial or stromal cells, of BRCA1 mutation carriers. Furthermore, R-loops are enriched at the 5′ end of those genes with promoter-proximal RNA polymerase II (Pol II) pausing. Genetic ablation of Cobra1, which encodes a Pol II-pausing and BRCA1-binding protein, ameliorates R-loop accumulation and reduces tumorigenesis in Brca1-knockout mouse mammary epithelium. Our studies show that Pol II pausing is an important contributor to BRCA1-associated R-loop accumulation and breast cancer development.",
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