Applied equine genetics

Research output: Contribution to journalArticle

11 Citations (Scopus)

Abstract

Genome sequencing of the domestic horse and subsequent advancements in the field of equine genomics have led to an explosion in the development of tools for mapping traits and diseases and evaluating gene expression. The objective of this review is to discuss the current progress in the field of equine genomics, with specific emphasis on assembly and analysis of the reference sequence and subsequent sequencing of a Quarter Horse mare; the genomic tools currently available to researchers and their implications in genomic investigations in the horse; the genomics of Mendelian and non-Mendelian traits; the genomics of performance traits and considerations regarding genetic testing in the horse. The whole-genome sequencing of a Quarter Horse mare has provided additional variants within the equine genome that extend past single nucleotide polymorphisms to include insertions/deletions and copy number variants. Equine single nucleotide polymorphism arrays have allowed for the investigation of both simple and complex genetic traits while DNA microarrays have provided a tool for examining gene expression across various tissues and with certain disease conditions. Recently, next-generation sequencing has become more affordable and both whole-genome DNA sequencing and transcriptome-wide RNA sequencing are methodologies that are being applied to equine genomic research. Research in the field of equine genomics continues to expand rapidly as the cost of genotyping and sequencing decreases, resulting in a need for quality bioinformatics software and expertise to appropriately handle both the size and complexity of these data.

Original languageEnglish (US)
Pages (from-to)538-544
Number of pages7
JournalEquine Veterinary Journal
Volume46
Issue number5
DOIs
StatePublished - 2014

Fingerprint

Horses
horses
genomics
Genomics
Quarter Horse
genome
Genome
single nucleotide polymorphism
mares
sequence analysis
Single Nucleotide Polymorphism
gene expression
genetic traits
explosions
RNA Sequence Analysis
Gene Expression
bioinformatics
transcriptome
Explosions
genotyping

Keywords

  • DNA test
  • Genetics
  • Genomics
  • Horse

ASJC Scopus subject areas

  • Equine

Cite this

Applied equine genetics. / Finno, Carrie J; Bannasch, Danika L.

In: Equine Veterinary Journal, Vol. 46, No. 5, 2014, p. 538-544.

Research output: Contribution to journalArticle

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