A modeling and execution environment for distributed scientific workflows

I. Altintas; S. Bhagwanani; D. Buttler; S. Chandra; Zhengang Cheng; Matthew A Coleman; T. Critchlow; A. Gupta; Wei Han; Ling Liu; B. Ludäscher; C. Pu; R. Moore; A. Shoshani; M. Vouk

doi:10.1109/SSDM.2003.1214989

A modeling and execution environment for distributed scientific workflows

I. Altintas, S. Bhagwanani, D. Buttler, S. Chandra, Zhengang Cheng, Matthew A Coleman, T. Critchlow, A. Gupta, Wei Han, Ling Liu, B. Ludäscher, C. Pu, R. Moore, A. Shoshani, M. Vouk

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

23 Scopus citations

Abstract

We illustrate how a domain scientist can perform a complex scientific task by interleaving data access, querying, and manipulation, as well as analytical steps and computations in complex, problem specific ways. We show how our system is used by a geneticist for solving the problem of discovering the so-called "co-regulated" genes by interlinking data and computation from several Web sites, local computations, as well as local and remote databases. The main distinctive features of our system (compared, e.g., to the ZOO environment (Ioannidis et al., 1996)) include: (i) executable workflows run as Web services; (ii) abstract workflows employ concept names and semantic types that are higher-level (and thus more "scientist friendly") than executable workflows; and (iii) our system supports automatic translation of the latter into the former.

Original language	English (US)
Title of host publication	Proceedings of the International Conference on Scientific and Statistical Database Management, SSDBM
Publisher	IEEE Computer Society
Pages	247-250
Number of pages	4
Volume	2003-January
ISBN (Print)	0769519644
DOIs	https://doi.org/10.1109/SSDM.2003.1214989
State	Published - 2003
Externally published	Yes
Event	15th International Conference on Scientific and Statistical Database Management, SSDBM 2003 - Cambridge, United States Duration: Jul 9 2003 → Jul 11 2003

Other

Other	15th International Conference on Scientific and Statistical Database Management, SSDBM 2003
Country/Territory	United States
City	Cambridge
Period	7/9/03 → 7/11/03

Keywords

Bioinformatics
Biology computing
Contracts
Databases
Educational institutions
Genomics
Humans
Laboratories
US Department of Energy
Web services

ASJC Scopus subject areas

Software
Information Systems

Access to Document

10.1109/SSDM.2003.1214989

Cite this

Altintas, I., Bhagwanani, S., Buttler, D., Chandra, S., Cheng, Z., Coleman, M. A., Critchlow, T., Gupta, A., Han, W., Liu, L., Ludäscher, B., Pu, C., Moore, R., Shoshani, A., & Vouk, M. (2003). A modeling and execution environment for distributed scientific workflows. In Proceedings of the International Conference on Scientific and Statistical Database Management, SSDBM (Vol. 2003-January, pp. 247-250). [1214989] IEEE Computer Society. https://doi.org/10.1109/SSDM.2003.1214989

A modeling and execution environment for distributed scientific workflows. / Altintas, I.; Bhagwanani, S.; Buttler, D.; Chandra, S.; Cheng, Zhengang; Coleman, Matthew A; Critchlow, T.; Gupta, A.; Han, Wei; Liu, Ling; Ludäscher, B.; Pu, C.; Moore, R.; Shoshani, A.; Vouk, M.

Proceedings of the International Conference on Scientific and Statistical Database Management, SSDBM. Vol. 2003-January IEEE Computer Society, 2003. p. 247-250 1214989.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Altintas, I, Bhagwanani, S, Buttler, D, Chandra, S, Cheng, Z, Coleman, MA, Critchlow, T, Gupta, A, Han, W, Liu, L, Ludäscher, B, Pu, C, Moore, R, Shoshani, A & Vouk, M 2003, A modeling and execution environment for distributed scientific workflows. in Proceedings of the International Conference on Scientific and Statistical Database Management, SSDBM. vol. 2003-January, 1214989, IEEE Computer Society, pp. 247-250, 15th International Conference on Scientific and Statistical Database Management, SSDBM 2003, Cambridge, United States, 7/9/03. https://doi.org/10.1109/SSDM.2003.1214989

Altintas, I. ; Bhagwanani, S. ; Buttler, D. ; Chandra, S. ; Cheng, Zhengang ; Coleman, Matthew A ; Critchlow, T. ; Gupta, A. ; Han, Wei ; Liu, Ling ; Ludäscher, B. ; Pu, C. ; Moore, R. ; Shoshani, A. ; Vouk, M. / A modeling and execution environment for distributed scientific workflows. Proceedings of the International Conference on Scientific and Statistical Database Management, SSDBM. Vol. 2003-January IEEE Computer Society, 2003. pp. 247-250

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AU - Cheng, Zhengang

AU - Coleman, Matthew A

AU - Critchlow, T.

AU - Gupta, A.

AU - Han, Wei

AU - Liu, Ling

AU - Ludäscher, B.

AU - Pu, C.

AU - Moore, R.

AU - Shoshani, A.

AU - Vouk, M.

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AB - We illustrate how a domain scientist can perform a complex scientific task by interleaving data access, querying, and manipulation, as well as analytical steps and computations in complex, problem specific ways. We show how our system is used by a geneticist for solving the problem of discovering the so-called "co-regulated" genes by interlinking data and computation from several Web sites, local computations, as well as local and remote databases. The main distinctive features of our system (compared, e.g., to the ZOO environment (Ioannidis et al., 1996)) include: (i) executable workflows run as Web services; (ii) abstract workflows employ concept names and semantic types that are higher-level (and thus more "scientist friendly") than executable workflows; and (iii) our system supports automatic translation of the latter into the former.

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KW - Biology computing

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A modeling and execution environment for distributed scientific workflows

Abstract

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Keywords

ASJC Scopus subject areas

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