Find Research Outputs

2019

Amygdala growth from youth to adulthood in the macaque monkey

Schumann, C., Scott, J. A., Lee, A., Bauman, M. D. & Amaral, D. G., Jan 1 2019, In : Journal of Comparative Neurology.

Research output: Contribution to journalArticle

Macaca
Amygdala
Haplorhini
Growth
Social Environment
1 Citation (Scopus)

A Myt1 family transcription factor defines neuronal fate by repressing non-neuronal genes

Lee, J., Taylor, C. A., Barnes, K. M., Shen, A., Stewart, E. V., Chen, A., Xiang, Y. K., Bao, Z. & Shen, K., Aug 6 2019, In : eLife. 8

Research output: Contribution to journalArticle

Open Access
Zinc Fingers
Zinc
Transcription Factors
Genes
Neurons
7 Citations (Scopus)

Analgesic Use and Ovarian Cancer Risk: An Analysis in the Ovarian Cancer Cohort Consortium

Ovarian Cancer Cohort Consortium (OC3), Feb 1 2019, In : Journal of the National Cancer Institute. 111, 2, p. 137-145 9 p.

Research output: Contribution to journalArticle

Open Access
Ovarian Neoplasms
Analgesics
Aspirin
Confidence Intervals
Non-Steroidal Anti-Inflammatory Agents
4 Citations (Scopus)

Analysis of cell-free DNA from 32,989 advanced cancers reveals novel co-occurring activating RET alterations and oncogenic signaling pathway aberrations

Rich, T. A., Reckamp, K. L., Chae, Y. K., Doebele, R. C., Iams, W. T., Oh, M., Raymond, V. M., Lanman, R. B., Riess, J. W., Stinchcombe, T. E., Subbiah, V., Trevarthen, D. R., Fairclough, S., Yen, J. & Gautschi, O., Jan 1 2019, In : Clinical Cancer Research. 25, 19, p. 5832-5842 11 p.

Research output: Contribution to journalArticle

Open Access
DNA
Gene Fusion
Neoplasms
Circulating Neoplastic Cells
Phase II Clinical Trials

Analysis of Computed Tomography Radiation Doses Used for Lung Cancer Screening Scans

Demb, J., Chu, P., Yu, S., Whitebird, R., Solberg, L., Miglioretti, D. L. & Smith-Bindman, R., Jan 1 2019, (Accepted/In press) In : JAMA Internal Medicine.

Research output: Contribution to journalArticle

Early Detection of Cancer
Lung Neoplasms
Tomography
Confidence Intervals
Radiation

Analysis of high-frequency PbtO2 measures in traumatic brain injury: Insights into the treatment threshold

Hirschi, R., Hawryluk, G. W. J., Nielson, J. L., Russell Huie, J., Zimmermann, L. L., Saigal, R., Ding, Q., Ferguson, A. R. & Manley, G., Oct 2019, In : Journal of Neurosurgery. 131, 4, p. 1216-1226 11 p.

Research output: Contribution to journalArticle

Brain Hypoxia
Therapeutics
Glasgow Outcome Scale
San Francisco
Traumatic Brain Injury

Analysis of insecticide exposure in California hummingbirds using liquid chromatography-mass spectrometry

Graves, E. E., Jelks, K. A., Foley, J. E., Filigenzi, M. S., Poppenga, R. H., Ernest, H. B., Melnicoe, R. & Tell, L. A., Jan 1 2019, In : Environmental Science and Pollution Research.

Research output: Contribution to journalArticle

Insecticides
Liquid chromatography
Pesticides
Liquid Chromatography
Feathers

Analysis of Metal Effects on C-Peptide Structure and Internalization

Stevenson, M. J., Farran, I. C., Uyeda, K. S., San Juan, J. A. & Heffern, M., Jan 1 2019, (Accepted/In press) In : ChemBioChem.

Research output: Contribution to journalArticle

C-Peptide
Metals
Peptide Hormones
Kidney Diseases
Therapeutic Uses
6 Citations (Scopus)

Analysis of tumor-infiltrating CD103 resident memory T-cell content in recurrent laryngeal squamous cell carcinoma

Mann, J. E., Smith, J. D., Birkeland, A. C., Bellile, E., Swiecicki, P., Mierzwa, M., Chinn, S. B., Shuman, A. G., Malloy, K. M., Casper, K. A., McLean, S. A., Moyer, J. S., Wolf, G. T., Bradford, C. R., Prince, M. E., Carey, T. E., McHugh, J. B., Spector, M. E. & Brenner, J. C., Feb 13 2019, In : Cancer Immunology, Immunotherapy. 68, 2, p. 213-220 8 p.

Research output: Contribution to journalArticle

Tumor-Infiltrating Lymphocytes
Squamous Cell Carcinoma
T-Lymphocytes
Survival
Neoplasms
6 Citations (Scopus)

An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar

Grubaugh, N. D., Gangavarapu, K., Quick, J., Matteson, N. L., De Jesus, J. G., Main, B., Tan, A. L., Paul, L. M., Brackney, D. E., Grewal, S., Gurfield, N., Van Rompay, K. K. A., Isern, S., Michael, S. F., Schneider, L. L., Loman, N. J. & Andersen, K. G., Jan 8 2019, In : Genome Biology. 20, 1, 8.

Research output: Contribution to journalArticle

virus
Viruses
viruses
Nanopores
West Nile virus

An anthrone-based Kv7.2/7.3 channel blocker with improved properties for the investigation of psychiatric and neurodegenerative disorders

Porter, J. D., Vivas, O., Weaver, C. D., Alsafran, A., DiMilo, E., Arnold, L. A., Dickson, E. J. & Dockendorff, C., Dec 1 2019, In : Bioorganic and Medicinal Chemistry Letters. 29, 23, 126681.

Research output: Contribution to journalArticle

Thallium
Alkylation
Neurodegenerative Diseases
Inhibitory Concentration 50
Psychiatry
3 Citations (Scopus)

A natural energy absorbent polymer composite: The equine hoof wall

Huang, W., Yaraghi, N. A., Yang, W., Velazquez-Olivera, A., Li, Z., Ritchie, R. O., Kisailus, D., Stover, S. M. & McKittrick, J., Jan 1 2019, In : Acta Biomaterialia.

Research output: Contribution to journalArticle

Hoof and Claw
Energy absorption
Keratin
Horses
Polymers

An atypical presentation of multi-systemic B-cell lymphoma in a horse

Torrent, A., Kilcoyne, I., Johnson, A., Affolter, V. K., Berryhill, E. & Aleman, M., Mar 1 2019, In : The Canadian veterinary journal = La revue veterinaire canadienne. 60, 3, p. 300-304 5 p.

Research output: Contribution to journalArticle

muscular atrophy
Muscular Atrophy
B-Cell Lymphoma
lymphoma
limbs (animal)
1 Citation (Scopus)

An economic analysis of a contingency model utilising vaccination for the control of equine influenza in a non-endemic country

Rosanowski, S. M., Carpenter, T., Adamson, D., Rogers, C. W., Pearce, P., Burns, M. & Cogger, N., Jan 1 2019, In : PLoS One. 14, 1, e0210885.

Research output: Contribution to journalArticle

equine influenza
Economic analysis
economic analysis
Human Influenza
Horses

Anejaculation: Relevance to Sexual Enjoyment in Men and Women

Shindel, A. W., Sep 1 2019, In : Journal of Sexual Medicine. 16, 9, p. 1324-1327 4 p.

Research output: Contribution to journalComment/debate

Ejaculation
Orgasm
Information Storage and Retrieval
Sexual Partners
Psychological Adaptation
Necrotizing Enterocolitis
Anemia

An Empirical Study on Perceptually Masking Privacy in Graph Visualizations

Chou, J. K., Bryan, C., Li, J. & Ma, K-L., May 7 2019, 2018 IEEE Symposium on Visualization for Cyber Security, VizSec 2018. Trent, S., Kohlhammer, J., Sauer, G., Gove, R., Best, D., Paul, C. L., Prigent, N. & Staheli, D. (eds.). Institute of Electrical and Electronics Engineers Inc., 8709181. (2018 IEEE Symposium on Visualization for Cyber Security, VizSec 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Visualization
1 Citation (Scopus)
Open Access
Epithelial Cells
Adenosine Triphosphate
Pharmacology
Cell Movement
Cues

Anesthesia Case of the Month

Chohan, A. S., Nov 1 2019, In : Journal of the American Veterinary Medical Association. 255, 9, p. 1016-1018 3 p.

Research output: Contribution to journalArticle

anesthesia
Anesthesia
28 Citations (Scopus)

A Neural Circuit Mechanism for Encoding Aversive Stimuli in the Mesolimbic Dopamine System

de Jong, J. W., Afjei, S. A., Pollak Dorocic, I., Peck, J. R., Liu, C., Kim, C. K., Tian, L., Deisseroth, K. & Lammel, S., Jan 2 2019, In : Neuron. 101, 1, p. 133-151.e7

Research output: Contribution to journalArticle

Dopaminergic Neurons
Reward
Dopamine
Learning
Reinforcement (Psychology)
Open Access
reaction chemistry
Benchmarking
enzymatic reactions
active sites
Catalytic Domain
3 Citations (Scopus)

A new hope for early psychosis care: The evolving landscape of digital care tools

Torous, J., Woodyatt, J., Keshavan, M. & Tully, L., May 1 2019, In : British Journal of Psychiatry. 214, 5, p. 269-272 4 p.

Research output: Contribution to journalArticle

Biomedical Technology
Psychotic Disorders
Health Priorities
Mental Health
Health

An Experimental Approach to Rigorously Assess Paneth Cell α-Defensin (Defa) mRNA Expression in C57BL/6 Mice

Castillo, P. A., Nonnecke, E. B., Ossorio, D. T., Tran, M. T. N., Goley, S. M., Lönnerdal, B., Underwood, M. & Bevins, C. L., Sep 11 2019, In : Scientific reports. 9, 1, 1 p.

Research output: Contribution to journalArticle

Open Access
Paneth Cells
Defensins
Inbred C57BL Mouse
Messenger RNA
Peptides
3 Citations (Scopus)

An Exploratory Examination of Neonatal Cytokines and Chemokines as Predictors of Autism Risk: The Early Markers for Autism Study

Heuer, L. S., Croen, L. A., Jones, K. L., Yoshida, C. K., Hansen, R. L., Yolken, R., Zerbo, O., DeLorenze, G., Kharrazi, M., Ashwood, P. & Van de Water, J. A., Jan 1 2019, In : Biological Psychiatry.

Research output: Contribution to journalArticle

Autistic Disorder
Chemokines
Cytokines
Biomarkers
Population Control
4 Citations (Scopus)

An exploratory longitudinal study of social and language outcomes in children with autism in bilingual home environments

Zhou, V., Munson, J. A., Greenson, J., Hou, Y., Rogers, S. J. & Estes, A. M., Feb 1 2019, In : Autism. 23, 2, p. 394-404 11 p.

Research output: Contribution to journalArticle

Autistic Disorder
Longitudinal Studies
Language
Group Homes
Gestures

An extremely preterm neonate with gray plaques on the back

Nakra, N. A., Awasthi, S., Lakshminrusimha, S. & Kalra, V., Jan 1 2019, In : NeoReviews. 20, 5, p. e302-e305

Research output: Contribution to journalArticle

Angry and fearful face conflict effects in post-traumatic stress disorder

Ashley, V. & Swick, D., Feb 5 2019, In : Frontiers in Psychology. 10, FEB, 136.

Research output: Contribution to journalArticle

Post-Traumatic Stress Disorders
Emotions
Facial Expression
Conflict (Psychology)
Self Report
2 Citations (Scopus)

An imager’s guide to perineural tumor spread in head and neck cancers: Radiologic footprints on 18 F-FDG PET, with CT and MRI correlates

Lee, H., Lazor, J. W., Assadsangabi, R. & Shah, J., Jan 1 2019, In : Journal of Nuclear Medicine. 60, 3, p. 304-311 8 p.

Research output: Contribution to journalArticle

Open Access
Head and Neck Neoplasms
Neural Pathways
Neoplasms
Denervation
Neck

An impact analysis of the NEXUS Chest CT clinical decision rule

Wang, R. C., Niedzwiecki, M. J., Nishijima, D. & Rodriguez, R. M., Jan 1 2019, In : American Journal of Emergency Medicine.

Research output: Contribution to journalArticle

Thorax
Wounds and Injuries
Costs and Cost Analysis
Radiation
Cost Savings

An Implementation Science Approach to Antibiotic Stewardship in Emergency Departments and Urgent Care Centers

Yadav, K., Stahmer, A., Mistry, R. D. & May, L., Jan 1 2019, (Accepted/In press) In : Academic Emergency Medicine.

Research output: Contribution to journalArticle

Emergency Medical Services
Ambulatory Care Facilities
Hospital Emergency Service
Anti-Bacterial Agents
Ambulatory Care

An insulin-dose error assessment grid: A new tool to evaluate glucose meter performance

Lyon, M. E., Lyon, O. A. S., Tran, N., DuBois, J. A. & Lyon, A. W., Aug 1 2019, In : Clinical Biochemistry. 70, p. 30-33 4 p.

Research output: Contribution to journalArticle

Open Access
Insulin
Glucose
Critical Illness
Error analysis
2 Citations (Scopus)

An integrated molecular diagnostic report for heart transplant biopsies using an ensemble of diagnostic algorithms

Parkes, M. D., Aliabadi, A. Z., Cadeiras, M., Crespo-Leiro, M. G., Deng, M., Depasquale, E. C., Goekler, J., Kim, D. H., Kobashigawa, J., Loupy, A., Macdonald, P., Potena, L., Zuckermann, A. & Halloran, P. F., Jun 2019, In : Journal of Heart and Lung Transplantation. 38, 6, p. 636-646 11 p.

Research output: Contribution to journalArticle

Molecular Pathology
Transplants
Biopsy
Histology
Area Under Curve

An interactive system for exploring historical fire data

Gomov, M., Crnovrsanin, T., Dasu, K. & Ma, K-L., Apr 1 2019, Proceedings - 2019 IEEE Pacific Visualization Symposium, PacificVis 2019. IEEE Computer Society, p. 277-281 5 p. 8781588. (IEEE Pacific Visualization Symposium; vol. 2019-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Climate change
Fires
Visualization
Catalysts
Costs

An interactive visualization system for large sets of phase space trajectories

Neuroth, T. A., Sauer, F. & Ma, K-L., Jan 1 2019, In : Computer Graphics Forum. 38, 3, p. 297-309 13 p.

Research output: Contribution to journalArticle

Visualization
Trajectories
Dynamical systems
Graphics processing unit

An intrinsic, label-free signal for identifying stem cell-derived cardiomyocyte subtype

Chang, C. W., Kao, H. K. J., Yechikov, S., Lieu, D. K. & Chan, J. W., Jan 1 2019, (Accepted/In press) In : Stem Cells.

Research output: Contribution to journalArticle

Cardiac Myocytes
Induced Pluripotent Stem Cells
Stem Cells
Myosin Subfragments
Cardiovascular Agents

An introduction to hardware, software, and other information technology needs of biomedical biobanks

Im, K., Gui, D. & Yong, W. H., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 17-29 13 p. (Methods in Molecular Biology; vol. 1897).

Research output: Chapter in Book/Report/Conference proceedingChapter

Biomedical Technology
Biomedical Research
Software
Informatics
Translational Medical Research
2 Citations (Scopus)

ANKHD1 is required for SMYD3 to promote tumor metastasis in hepatocellular carcinoma

Zhou, Z., Jiang, H., Tu, K., Yu, W., Zhang, J., Hu, Z., Zhang, H., Hao, D., Huang, P., Wang, J., Wang, A., Xiao, Z. & He, C., Jan 15 2019, In : Journal of Experimental and Clinical Cancer Research. 38, 1, 18.

Research output: Contribution to journalArticle

Hepatocellular Carcinoma
Neoplasm Metastasis
Neoplasms
Mass Spectrometry
Immunohistochemistry

Anomalous Trends in Nucleic Acid-Based Electrochemical Biosensors with Nanoporous Gold Electrodes

Veselinovic, J., Almashtoub, S. & Seker, E., Jan 1 2019, (Accepted/In press) In : Analytical chemistry.

Research output: Contribution to journalArticle

Biosensors
Gold
Nucleic Acids
Electrodes
Electrochemical sensors
5 Citations (Scopus)

A nonhuman primate model of inherited retinal disease

Moshiri, A., Chen, R., Kim, S., Harris, R. A., Li, Y., Raveendran, M., Davis, S., Liang, Q., Pomerantz, O., Wang, J., Garzel, L., Cameron, A., Yiu, G. C., Stout, J. T., Huang, Y., Murphy, C. J., Roberts, J. A., Gopalakrishna, K. N., Boyd, K., Artemyev, N. O. & 2 others, Rogers, J. & Thomasy, S. M., Feb 1 2019, In : Journal of Clinical Investigation. 129, 2, p. 863-874 12 p.

Research output: Contribution to journalArticle

Retinal Diseases
Color Vision Defects
Primates
Light Signal Transduction
Retinal Degeneration
6 Citations (Scopus)

A nonsynonymous mutation in PLCG2 reduces the risk of Alzheimer’s disease, dementia with Lewy bodies and frontotemporal dementia, and increases the likelihood of longevity

DESGESCO (Dementia Genetics Spanish Consortium), EADB (Alzheimer Disease European DNA biobank), EADB (Alzheimer Disease European DNA biobank), IFGC (International FTD-Genomics Consortium), IPDGC (The International Parkinson Disease Genomics Consortium), IPDGC (The International Parkinson Disease Genomics Consortium), RiMod-FTD (Risk and Modifying factors in Fronto-Temporal Dementia), Netherlands Brain Bank (NBB) & The GIFT (Genetic Investigation in Frontotemporal Dementia and Alzheimer’s Disease) Study Group, Jan 1 2019, In : Acta Neuropathologica.

Research output: Contribution to journalArticle

Open Access
Lewy Body Disease
Frontotemporal Dementia
Alzheimer Disease
Mutation
Neurodegenerative Diseases
1 Citation (Scopus)

An open-label phase IB study to evaluate GSK3052230 in combination with paclitaxel and carboplatin, or docetaxel, in FGFR1-amplified non-small cell lung cancer

Morgensztern, D., Karaseva, N., Felip, E., Delgado, I., Burdaeva, O., Dómine, M., Lara, P. N., Paik, P. K., Lassen, U., Orlov, S., Trigo, J., Shomova, M., Baker-Neblett, K., Vasquez, J., Wang, X., Yan, L., Mitrica, I., DeYoung, M. P. & Garrido, P., Oct 1 2019, In : Lung Cancer. 136, p. 74-79 6 p.

Research output: Contribution to journalArticle

docetaxel
Carboplatin
Paclitaxel
Non-Small Cell Lung Carcinoma
Maximum Tolerated Dose

An Open Trial of Morning Bright Light Treatment Among US Military Veterans with Chronic Low Back Pain: A Pilot Study

Burgess, H. J., Rizvydeen, M., Kimura, M., Pollack, M. H., Hobfoll, S. E., Rajan, K. & Burns, J. W., Apr 1 2019, In : Pain medicine (Malden, Mass.). 20, 4, p. 770-778 9 p.

Research output: Contribution to journalArticle

Veterans
Low Back Pain
Light
Pain
Sleep

Another dogma dispelled? Antipsychotic treatment of sympathomimetic toxicity

Richards, J. R. & Derlet, R. W., Dec 2019, In : American Journal of Emergency Medicine. 37, 12, p. 2256-2257 2 p.

Research output: Contribution to journalLetter

A novel eye-tracking paradigm for indexing social avoidance-related behavior in fragile X syndrome

Klusek, J., Moser, C., Schmidt, J., Abbeduto, L. J. & Roberts, J. E., Jan 1 2019, (Accepted/In press) In : American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics.

Research output: Contribution to journalArticle

Avoidance Learning
Fragile X Syndrome
Outcome Assessment (Health Care)
Phenotype
Young Adult

A novel hepadnavirus is associated with chronic hepatitis and hepatocellular carcinoma in cats

Pesavento, P. A., Jackson, K., Scase, T., Tse, T., Hampson, B., Munday, J. S., Barrs, V. R. & Beatty, J. A., Oct 21 2019, In : Viruses. 11, 10, 969.

Research output: Contribution to journalArticle

Open Access
Hepadnaviridae
Chronic Hepatitis
Hepatocellular Carcinoma
Cats
Hepatitis B virus

A novel method for measuring learning opportunities provided by parents to young children with autism spectrum disorder

Davlantis, K. S., Estes, A., Dawson, G. & Rogers, S. J., Jan 1 2019, (Accepted/In press) In : Autism.

Research output: Contribution to journalArticle

Parents
Learning
Vocabulary
Least-Squares Analysis
Psychometrics

A novel method to prevent terminal appositional overgrowth following pediatric below knee amputations a case series and review of the literature

Blank, A. T., Luchetti, T. J., Lerman, D. M., Iamthanaporn, K., Sukanthanak, B. & Lor Randall, R., Dec 2019, In : Bulletin of the Hospital for Joint Diseases. 77, 4, p. 269-274 6 p.

Research output: Contribution to journalArticle

Amputation
Osseointegration
Knee
Pediatrics
Prosthesis Retention

A novel muscle cramp scale (MCS) in amyotrophic lateral sclerosis (ALS)

Mitsumoto, H., Chiuzan, C., Gilmore, M., Zhang, Y., Ibagon, C., McHale, B., Hupf, J. & Oskarsson, B. E., Jan 1 2019, In : Amyotrophic Lateral Sclerosis and Frontotemporal Degeneration.

Research output: Contribution to journalArticle

Muscle Cramp
Amyotrophic Lateral Sclerosis
Telephone

A Novel Next-Generation Sequencing Approach to Detecting Microsatellite Instability and Pan-Tumor Characterization of 1000 Microsatellite Instability–High Cases in 67,000 Patient Samples

Trabucco, S. E., Gowen, K., Maund, S. L., Sanford, E., Fabrizio, D. A., Hall, M. J., Yakirevich, E., Gregg, J. P., Stephens, P. J., Frampton, G. M., Hegde, P. S., Miller, V. A., Ross, J. S., Hartmaier, R. J., Huang, S. M. A. & Sun, J. X., Nov 2019, In : Journal of Molecular Diagnostics. 21, 6, p. 1053-1066 14 p.

Research output: Contribution to journalArticle

Open Access
Microsatellite Instability
Microsatellite Repeats
Neoplasms
Immunohistochemistry
Phosphatidylinositol 3-Kinase

A Novel Reporter Mouse Uncovers Endogenous Brn3b Expression

Miltner, A. M., Mercado-Ayon, Y., Cheema, S. K., Zhang, P., Zawadzki, R. & La Torre Vila, A., Jun 14 2019, In : International journal of molecular sciences. 20, 12

Research output: Contribution to journalArticle

Open Access
Retinal Ganglion Cells
mice
Optics
Clustered Regularly Interspaced Short Palindromic Repeats
Genetic engineering