Find Research Outputs

2019

2019: an update from the Editor-in-Chief

Cherry, S. R., Apr 8 2019, In : Physics in medicine and biology. 64, 8, 1 p.

Research output: Contribution to journal › Article

Open Access

2D Visualization of the Psoriasis Transcriptome Fails to Support the Existence of Dual-Secreting IL-17A/IL-22 Th17 T Cells

Le, S. T., Merleev, A. A., Luxardi, G., Shimoda, M., Adamopoulos, I., Tsoi, L. C., Wang, J. Z., Alexanian, C., Raychaudhuri, S. P., Hwang, S. T., Gudjonsson, J., Marusina, A. I. & Maverakis, E. M., Jan 1 2019, In : Frontiers in immunology. 10, 1 p.

Research output: Contribution to journal › Article

Open Access

Th17 Cells

Interleukin-17

Transcriptome

Psoriasis

T-Lymphocytes

1 Citation (Scopus)

3D-printed breast phantom for multi-purpose and multi-modality imaging

He, Y., Liu, Y., Dyer, B. A., Boone, J. M., Liu, S., Chen, T., Zheng, F., Zhu, Y., Sun, Y., Rong, Y. & Qiu, J., Jan 1 2019, In : Quantitative Imaging in Medicine and Surgery. 9, 1, p. 63-74 12 p.

Research output: Contribution to journal › Article

Breast

Calcinosis

Magnetic Resonance Imaging

Quality Control

Technology

A 17-gene Panel for Prediction of Adverse Prostate Cancer Pathologic Features: Prospective Clinical Validation and Utility

Eggener, S., Karsh, L. I., Richardson, T., Shindel, A. W., Lu, R., Rosenberg, S., Goldfischer, E., Korman, H., Bennett, J., Newmark, J. & Denes, B. S., Jan 1 2019, In : Urology.

Research output: Contribution to journal › Article

Prostate

Prostatic Neoplasms

Genes

Prostatectomy

Neoplasm Grading

A 51-Year-Old Man With Unresolved Pulmonary Infiltrates Following Streptococcus pneumoniae Pneumonia

Pugashetti, J. V., Adams, J. Y., Zeki, A. & Kuhn, B., Feb 1 2019, In : Chest. 155, 2, p. e47-e50

Research output: Contribution to journal › Article

Streptococcus pneumoniae

Pneumonia

Lung

Levofloxacin

Sinusitis

AAST Critical Care Committee clinical consensus: ECMO, nutrition

Zonies, D., Codner, P., Park, P., Martin, N. D., Lissauer, M., Evans, S., Cocanour, C. S. & Brasel, K., Mar 1 2019, In : Trauma Surgery and Acute Care Open. 4, 1, e000304.

Research output: Contribution to journal › Article

Open Access

Critical Care

Wounds and Injuries

Extracorporeal Membrane Oxygenation

Research

Critical Illness

1 Citation (Scopus)

A blood-based signature of cerebrospinal fluid Aβ _1–42 status

Alzheimer’s Disease Metabolomics Consortium & Alzheimer’s Disease Neuroimaging Initiative, Dec 1 2019, In : Scientific Reports. 9, 1, 4163.

Research output: Contribution to journal › Article

Open Access

Cerebrospinal Fluid

Amyloid

Alzheimer Disease

Positron-Emission Tomography

Area Under Curve

1 Citation (Scopus)

A Bump-Hole Approach for Directed RNA Editing

Monteleone, L. R., Matthews, M. M., Palumbo, C. M., Thomas, J. M., Zheng, Y., Chiang, Y., Fisher, A. J. & Beal, P. A., Feb 21 2019, In : Cell Chemical Biology. 26, 2, p. 269-277.e5

Research output: Contribution to journal › Article

RNA Editing

Guide RNA

RNA

Adenosine Deaminase

Oligonucleotides

A Case for n-of-1 Trials - Reply

Kravitz, R. L., Sim, I. & Duan, N., Mar 1 2019, In : JAMA Internal Medicine. 179, 3, 1 p.

Research output: Contribution to journal › Letter

Acceptability, Usability, and Effectiveness: A Qualitative Study Evaluating a Pediatric Telemedicine Program

Sauers-Ford, H. S., Hamline, M. Y., Gosdin, M. M., Kair, L., Weinberg, G. M., Marcin, J. P. & Rosenthal, J., Jan 1 2019, In : Academic Emergency Medicine.

Research output: Contribution to journal › Article

Telemedicine

Pediatrics

Interviews

Referral and Consultation

Patient Care

1 Citation (Scopus)

Acceptance versus reappraisal: Behavioral, autonomic, and neural effects

Goldin, P. R., Moodie, C. A. & Gross, J. J., Jan 1 2019, (Accepted/In press) In : Cognitive, Affective and Behavioral Neuroscience.

Research output: Contribution to journal › Article

Autonomic Agents

Emotions

Brain

Respiratory Rate

Heart Rate

Acinetobacter baumannii OxyR Regulates the Transcriptional Response to Hydrogen Peroxide

Juttukonda, L. J., Green, E. R., Lonergan, Z. R., Heffern, M., Chang, C. J. & Skaar, E. P., Jan 1 2019, In : Infection and Immunity. 87, 1

Research output: Contribution to journal › Article

Acinetobacter baumannii

Hydrogen Peroxide

Infection

Acinetobacter Infections

Lung

1 Citation (Scopus)

A Clinical Prediction Rule to Identify Febrile Infants 60 Days and Younger at Low Risk for Serious Bacterial Infections

Kuppermann, N., Dayan, P. S., Levine, D. A., Vitale, M., Tzimenatos, L. S., Tunik, M. G., Saunders, M., Ruddy, R. M., Roosevelt, G., Rogers, A. J., Powell, E. C., Nigrovic, L. E., Muenzer, J., Linakis, J. G., Grisanti, K., Jaffe, D. M., Hoyle, J. D., Greenberg, R., Gattu, R., Cruz, A. T. & 16 othersCrain, E. F., Cohen, D. M., Brayer, A., Borgialli, D., Bonsu, B., Browne, L., Blumberg, S., Bennett, J. E., Atabaki, S. M., Anders, J., Alpern, E. R., Miller, B., Casper, T. C., Dean, J. M., Ramilo, O. & Mahajan, P., Apr 1 2019, In : JAMA Pediatrics. 173, 4, p. 342-351 10 p.

Research output: Contribution to journal › Article

Decision Support Techniques

Bacterial Infections

Fever

Bacteremia

Bacterial Meningitides

A Combination Flap for Repair of Eclabium

Joo, J. S., Petukhova, T. & Eisen, D. B., Feb 1 2019, In : Dermatologic surgery : official publication for American Society for Dermatologic Surgery [et al.]. 45, 2, p. 291-293 3 p.

Research output: Contribution to journal › Article

A combined hiPSC-derived endothelial cell and in vitro microfluidic platform for assessing biomaterial-based angiogenesis

Natividad-Diaz, S. L., Browne, S., Jha, A. K., Ma, Z., Hossainy, S., Kurokawa, Y. K., George, S. & Healy, K. E., Feb 1 2019, In : Biomaterials. 194, p. 73-83 11 p.

Research output: Contribution to journal › Article

Induced Pluripotent Stem Cells

Microfluidics

Endothelial cells

Biocompatible Materials

Stem cells

A comparison of automated segmentation and manual tracing in estimating hippocampal volume in ischemic stroke and healthy control participants

Khlif, M. S., Egorova, N., Werden, E., Redolfi, A., Bocardi, M., DeCarli, C., Fletcher, E., Singh, B., Li, Q., Bird, L. & Brodtmann, A., Jan 1 2019, (Accepted/In press) In : NeuroImage: Clinical. 101581.

Research output: Contribution to journal › Article

Healthy Volunteers

Atlases

Stroke

Anatomy

Stroke Volume

A Comparison of Geriatric Hip Fracture Databases

Shelton, T., Hecht, G., Slee, C. & Wolinsky, P. R., Feb 1 2019, In : The Journal of the American Academy of Orthopaedic Surgeons. 27, 3, p. e135-e141

Research output: Contribution to journal › Article

Hip Fractures

Quality Improvement

Geriatrics

Databases

Wounds and Injuries

Acute coronary syndrome after cannabis use: Correlation with quantitative toxicology testing

Richards, J. R., Singh, G., Parikh, A. K. & Venugopal, S., Jan 1 2019, In : American Journal of Emergency Medicine.

Research output: Contribution to journal › Article

Cannabis

Acute Coronary Syndrome

Toxicology

Percutaneous Coronary Intervention

Accelerated Idioventricular Rhythm

Acute infection and subsequent subclinical reactivation of herpes simplex virus 2 after vaginal inoculation of rhesus macaques

Lo, M., Zhu, J., Hansen, S. G., Carroll, T., Zuend, C. F., Nöel-Romas, L., Ma, Z. M., Fritts, L., Huang, M. L., Sun, S., Huang, Y., Koelle, D. M., Picker, L. J., Burgener, A., Corey, L. & Miller, C. J., Jan 1 2019, In : Journal of Virology. 93, 2, e01574-18.

Research output: Contribution to journal › Article

Human herpesvirus 2

Asymptomatic Infections

Human Herpesvirus 2

Macaca mulatta

infection

Acute lead arsenate poisoning in beef cattle in Uruguay

Schild, C. O., Giannitti, F., Medeiros, R. M. T., da Silva Silveira, C., Caffarena, R. D., Poppenga, R. H. & Riet-Correa, F., Jan 1 2019, In : Journal of Veterinary Diagnostic Investigation.

Research output: Contribution to journal › Article

lead arsenate

Uruguay

Lead Poisoning

lesions (animal)

beef cattle

Adaptive task difficulty influences neural plasticity and transfer of training

Flegal, K. E., Ragland, J. D. & Ranganath, C., Mar 1 2019, In : NeuroImage. 188, p. 111-121 11 p.

Research output: Contribution to journal › Article

Neuronal Plasticity

Short-Term Memory

Episodic Memory

Brain

Hippocampus

2 Citations (Scopus)

A deep learning model to predict a diagnosis of Alzheimer disease by using ¹⁸ F-FDG PET of the brain

Ding, Y., Sohn, J. H., Kawczynski, M. G., Trivedi, H., Harnish, R., Jenkins, N. W., Lituiev, D., Copeland, T. P., Aboian, M. S., Aparici, C. M., Behr, S. C., Flavell, R. R., Huang, S. Y., Zalocusky, K. A., Nardo, L., Seo, Y., Hawkins, R. A., Pampaloni, M. H., Hadley, D. & Franc, B. L., Mar 1 2019, In : RADIOLOGY. 290, 3, p. 456-464 9 p.

Research output: Contribution to journal › Article

Fluorodeoxyglucose F18

Alzheimer Disease

Learning

ROC Curve

Brain

A demonstration of modularity, reuse, reproducibility, portability and scalability for modeling and simulation of cardiac electrophysiology using Kepler Workflows

Yang, P. C., Purawat, S., Ieong, P. U., Jeng, M. T., DeMarco, K. R., Vorobyov, I., McCulloch, A. D., Altintas, I., Amaro, R. E. & Clancy, C. E., Mar 1 2019, In : PLoS computational biology. 15, 3, p. e1006856

Research output: Contribution to journal › Article

Open Access

Cardiac Electrophysiology

electrophysiology

Kepler

Workflow

Portability

Advanced glycation end product carboxymethyl-lysine and risk of incident peripheral artery disease in older adults: The Cardiovascular Health Study

Garg, P. K., Biggs, M. L., Barzilay, J., Djousse, L., Hirsch, C. H., Ix, J. H., Kizer, J. R., Tracy, R. P., Newman, A. B., Siscovick, D. S. & Mukamal, K. J., Jan 1 2019, In : Diabetes and Vascular Disease Research.

Research output: Contribution to journal › Letter

Open Access

Advanced Glycosylation End Products

Peripheral Arterial Disease

Health

Proportional Hazards Models

Coronary Disease

Advances in therapeutic endoscopy

Tejaswi, S. L., Girotra, M., Lima, J. P. & Tabibian, J. H., Jan 1 2019, In : Gastroenterology Research and Practice. 2019, 6253837.

Research output: Contribution to journal › Editorial

Open Access

Endoscopy

Therapeutics

Afatinib With Pembrolizumab for Treatment of Patients With Locally Advanced/Metastatic Squamous Cell Carcinoma of the Lung: The LUX-Lung IO/KEYNOTE 497 Study Protocol

Levy, B., Paz-Ares, L., Bennouna, J., Felip, E., Abreu, D. R., Isla, D., Barlesi, F., Molinier, O., Madelaine, J., Audigier-Valette, C., Kim, S. W., Kim, H. R., Ozguroglu, M., Erman, M., Badin, F. B., Mekhail, T. M., Scheff, R., Chisamore, M. J., Sadrolhefazi, B. & Riess, J., Jan 1 2019, In : Clinical lung cancer.

Research output: Contribution to journal › Article

Open Access

Squamous Cell Carcinoma

Lung

Safety

Epidermal Growth Factor Receptor

Survival

Affiliation and disease risk: social networks mediate gut microbial transmission among rhesus macaques

Balasubramaniam, K. N., Beisner, B., Hubbard, J. A., Vandeleest, J. J., Atwill, E. R. & Mccowan, B., May 1 2019, In : Animal Behaviour. 151, p. 131-143 13 p.

Research output: Contribution to journal › Article

grooming

social networks

social network

Macaca mulatta

intestinal microorganisms

Affinity selection and sequencing

Lam, K., Apr 1 2019, In : Nature Chemical Biology. 15, 4, p. 320-321 2 p.

Research output: Contribution to journal › Article

Libraries

Peptide Library

Peptides

Tandem Mass Spectrometry

Gel Chromatography

Age-dependent pulmonary reactivity to house dust mite allergen: a model of adult-onset asthma?

Mack, S., Shin, J., Ahn, Y., Castaneda, A. R., Peake, J., Fulgar, C., Zhang, J. J., Cho, Y. H. & Pinkerton, K. E., May 1 2019, In : American journal of physiology. Lung cellular and molecular physiology. 316, 5, p. L757-L763

Research output: Contribution to journal › Article

Dermatophagoides Antigens

Pyroglyphidae

Asthma

Lung

Bronchoalveolar Lavage Fluid

1 Citation (Scopus)

A Gs-coupled purinergic receptor boosts ca ²⁺ influx and vascular contractility during diabetic hyperglycemia

Prada, M. P., Syed, A. U., Buonarati, O. R., Reddy, G. R., Nystoriak, M. A., Ghosh, D., Simo Olivar, S., Sato, D., Sasse, K. C., Ward, S. M., Santana, L. F., Xiang, Y. K., Hell, J. W., Nieves-Cintrón, M. & Navedo, M. F., Mar 1 2019, In : eLife. 8, e42214.

Research output: Contribution to journal › Article

Open Access

Purinergic Receptors

Cyclic AMP-Dependent Protein Kinases

Hyperglycemia

Blood Vessels

Glucose

AHNS Series – Do you know your guidelines? Assessment and management of malnutrition in patients with head and neck cancer: A review of the NCCN Clinical Practice Guidelines In Oncology (NCCN Guidelines^®)

Gill, A., Givi, B. B. & Moore, M., Jan 1 2019, (Accepted/In press) In : Head and Neck.

Research output: Contribution to journal › Article

Head and Neck Neoplasms

Practice Guidelines

Malnutrition

Guidelines

Neoplasms

Algae-derived β-glucan enhanced gut health and immune responses of weaned pigs experimentally infected with a pathogenic E. coli

Kim, K., Ehrlich, A., Perng, V., Chase, J. A., Raybould, H. E., Li, X., Atwill, E. R., Whelan, R., Sokale, A. & Liu, Y., Feb 1 2019, In : Animal Feed Science and Technology. 248, p. 114-125 12 p.

Research output: Contribution to journal › Article

algae

glucans

digestive system

immune response

Escherichia coli

Alginate Hydrogel Modified with a Ligand Interacting with α3β1 Integrin Receptor Promotes the Differentiation of 3D Neural Spheroids toward Oligodendrocytes in Vitro

Wen, H., Xiao, W., Biswas, S., Cong, Z. Q., Liu, X. M., Lam, K., Liao, Y. H. & Deng, W., Jan 1 2019, In : ACS Applied Materials and Interfaces.

Research output: Contribution to journal › Article

Hydrogel

Alginate

Hydrogels

Integrins

Ligands

All-in-One Iontronic Sensing Paper

Li, S., Pan, N., Zhu, Z., Li, R., Li, B., Chu, J., Li, G., Chang, Y. & Pan, T., Jan 1 2019, (Accepted/In press) In : Advanced Functional Materials. 1807343.

Research output: Contribution to journal › Article

Gluing

Printing

Packaging

Health

Substrates

Altered muscle activation patterns (AMAP): An analytical tool to compare muscle activity patterns of hemiparetic gait with a normative profile

Srivastava, S., Patten, C. & Kautz, S. A., Jan 31 2019, In : Journal of NeuroEngineering and Rehabilitation. 16, 1, 21.

Research output: Contribution to journal › Article

Gait

Stroke

Muscles

Electromyography

Population

Alternative splicing of MXD3 and its regulation of MXD3 levels in glioblastoma

Ngo, T., Corrales, A., Bourne, T., Elmojahid, S., Lam, K. & Diaz, E. D., Jan 1 2019, In : Frontiers in Molecular Biosciences. 6, FEB, 00005.

Research output: Contribution to journal › Article

Open Access

Cell proliferation

Alternative Splicing

Glioblastoma

Genes

3' Untranslated Regions

Alveolar macrophage reaction to PM _2.5 of hazy day in vitro: Evaluation methods and mitochondrial screening to determine mechanisms of biological effect

Wei, H., Zhang, Y., Song, S., Pinkerton, K. E., Geng, H. & Ro, C. U., Jun 15 2019, In : Ecotoxicology and Environmental Safety. 174, p. 566-573 8 p.

Research output: Contribution to journal › Article

Polycyclic Aromatic Hydrocarbons

Alveolar Macrophages

Mitochondrial Dynamics

Polycyclic aromatic hydrocarbons

Screening

5 Citations (Scopus)

Amino Acid Dysregulation Metabotypes: Potential Biomarkers for Diagnosis and Individualized Treatment for Subtypes of Autism Spectrum Disorder

Smith, A. M., King, J. J., West, P. R., Ludwig, M. A., Donley, E. L. R., Burrier, R. E. & Amaral, D. G., Feb 15 2019, In : Biological Psychiatry. 85, 4, p. 345-354 10 p.

Research output: Contribution to journal › Article

Biomarkers

Amino Acids

Branched Chain Amino Acids

Autistic Disorder

Metabolome

Amino acid status in dogs with protein-losing nephropathy

Parker, V. J., Fascetti, A. J. & Klamer, B. G., Jan 1 2019, In : Journal of Veterinary Internal Medicine.

Research output: Contribution to journal › Article

Open Access

kidney diseases

Dogs

Amino Acids

amino acids

dogs

A missense mutation in damage-specific DNA binding protein 2 is a genetic risk factor for ocular squamous cell carcinoma in Belgian horses

Knickelbein, K. E., Utter, M., Singer-Berk, M., Reilly, C. M., Clode, A. B., Famula, T. R., Michau, T. M. & Bellone, R., Jan 1 2019, In : Equine veterinary journal.

Research output: Contribution to journal › Article

Belgian (horse breed)

missense mutation

DNA-binding proteins

squamous cell carcinoma

DNA-Binding Proteins

A Modern Reaffirmation of Surgery as the Optimal Treatment for Solitary Fibrous Tumors of the Pleura

Yao, M. J., Ding, L., Atay, S. M., Toubat, O., Ebner, P., David, E., McFadden, P. M. & Kim, A. W., Jan 1 2019, (Accepted/In press) In : Annals of Thoracic Surgery.

Research output: Contribution to journal › Article

Pleural Solitary Fibrous Tumor

Survival

Therapeutics

Pneumonectomy

A multicenter study of ketamine effects on functional connectivity: Large scale network relationships, hubs and symptom mechanisms

Fleming, L. M., Javitt, D. C., Carter, C. S., Kantrowitz, J. T., Girgis, R. R., Kegeles, L. S., Ragland, J. D., Maddock, R. J., Lesh, T. A., Tanase, C., Robinson, J., Potter, W. Z., Carlson, M., Wall, M. M., Choo, T. H., Grinband, J., Lieberman, J., Krystal, J. H. & Corlett, P. R., Jan 1 2019, In : NeuroImage: Clinical. 22, 101739.

Research output: Contribution to journal › Article

Open Access

Ketamine

Multicenter Studies

Schizophrenia

Prefrontal Cortex

Excitatory Amino Acid Antagonists

3 Citations (Scopus)

Analgesic Use and Ovarian Cancer Risk: An Analysis in the Ovarian Cancer Cohort Consortium

Ovarian Cancer Cohort Consortium (OC3), Feb 1 2019, In : Journal of the National Cancer Institute. 111, 2, p. 137-145 9 p.

Research output: Contribution to journal › Article

Open Access

Ovarian Neoplasms

Analgesics

Aspirin

Confidence Intervals

Non-Steroidal Anti-Inflammatory Agents

Analysis of insecticide exposure in California hummingbirds using liquid chromatography-mass spectrometry

Graves, E. E., Jelks, K. A., Foley, J. E., Filigenzi, M. S., Poppenga, R. H., Ernest, H. B., Melnicoe, R. & Tell, L. A., Jan 1 2019, In : Environmental Science and Pollution Research.

Research output: Contribution to journal › Article

Insecticides

Liquid chromatography

Pesticides

Liquid Chromatography

Feathers

An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar

Grubaugh, N. D., Gangavarapu, K., Quick, J., Matteson, N. L., De Jesus, J. G., Main, B., Tan, A. L., Paul, L. M., Brackney, D. E., Grewal, S., Gurfield, N., Van Rompay, K. K. A., Isern, S., Michael, S. F., Schneider, L. L., Loman, N. J. & Andersen, K. G., Jan 8 2019, In : Genome Biology. 20, 1, 8.

Research output: Contribution to journal › Article

virus

Viruses

viruses

Nanopores

West Nile virus

A natural energy absorbent polymer composite: The equine hoof wall

Huang, W., Yaraghi, N. A., Yang, W., Velazquez-Olivera, A., Li, Z., Ritchie, R. O., Kisailus, D., Stover, S. M. & McKittrick, J., Jan 1 2019, In : Acta Biomaterialia.

Research output: Contribution to journal › Article

Hoof and Claw

Energy absorption

Keratin

Horses

Polymers