Find Research Outputs

2020

A Deep Generative Model for Graph Layout

Kwon, O. H. & Ma, K. L., Jan 2020, In : IEEE Transactions on Visualization and Computer Graphics. 26, 1, p. 665-675 11 p., 8805452.

Research output: Contribution to journalArticle

Visualization
Learning systems

An Incremental Dimensionality Reduction Method for Visualizing Streaming Multidimensional Data

Fujiwara, T., Chou, J. K., Shilpika, Xu, P., Ren, L. & Ma, K. L., Jan 2020, In : IEEE Transactions on Visualization and Computer Graphics. 26, 1, p. 418-428 11 p., 8809834.

Research output: Contribution to journalArticle

Animation
Computational complexity
Visualization
Uncertainty

Anion gap reference intervals show instrument dependence and weak correlation with albumin levels

Pratumvinit, B., Lam, L., Kongruttanachok, N., Hemthong, C., Kost, G. J., Kamkang, P. & Reesukumal, K., Jan 2020, In : Clinica Chimica Acta. 500, p. 172-179 8 p.

Research output: Contribution to journalArticle

Open Access
Acid-Base Equilibrium
Albumins
Electrolytes
Differential Diagnosis
Hypoalbuminemia

Anthropomorphic Physical Breast Phantom Based on Patient Breast CT Data: Preliminary Results

Daskalov, S., Okkalidis, N., Boone, J. M., Marinov, S., Bliznakov, Z., Mettivier, G., Bosmans, H., Russo, P. & Bliznakova, K., Jan 1 2020, 15th Mediterranean Conference on Medical and Biological Engineering and Computing – MEDICON 2019 - Proceedings of MEDICON 2019. Henriques, J., de Carvalho, P. & Neves, N. (eds.). Springer, p. 367-374 8 p. (IFMBE Proceedings; vol. 76).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Tomography
Extrusion
Tissue
Fabrication
X rays

Assays to Evaluate Toxoplasma–Macrophage Interactions

Mukhopadhyay, D. & Saeij, J. P. J., Jan 1 2020, Methods in Molecular Biology. Humana Press Inc., p. 347-370 24 p. (Methods in Molecular Biology; vol. 2071).

Research output: Chapter in Book/Report/Conference proceedingChapter

Toxoplasma
Parasites
Macrophages
Indoleamine-Pyrrole 2,3,-Dioxygenase
Arginase

Cetylpyridinium chloride is a potent AMP-activated kinase (AMPK) inducer and has therapeutic potential in cancer

Allen, S. A., Datta, S., Sandoval, J., Tomilov, A., Sears, T., Woolard, K., Angelastro, J. M. & Cortopassi, G. A., Jan 2020, In : Mitochondrion. 50, p. 19-24 6 p.

Research output: Contribution to journalArticle

Cetylpyridinium
AMP-Activated Protein Kinases
temozolomide
Glioblastoma
Pharmaceutical Preparations
Killer Whale
Beluga Whale
Bottle-Nosed Dolphin
Delphinapterus leucas
Orcinus orca

Correction to: Metabolomics profiles of patients with Wilson disease reveal a distinct metabolic signature (Metabolomics, (2019), 15, 3, (43), 10.1007/s11306-019-1505-6)

Sarode, G. V., Kim, K., Kieffer, D. A., Shibata, N. M., Litwin, T., Czlonkowska, A. & Medici, V., Jan 1 2020, In : Metabolomics. 16, 1, 3.

Research output: Contribution to journalComment/debate

Open Access
Hepatolenticular Degeneration
Metabolomics
Mass spectrometry
Mass Spectrometry
Liquid chromatography

Decoding a Complex Visualization in a Science Museum-An Empirical Study

Ma, J., Ma, K. L. & Frazier, J., Jan 2020, In : IEEE Transactions on Visualization and Computer Graphics. 26, 1, p. 472-481 10 p., 8805458.

Research output: Contribution to journalArticle

Museums
Decoding
Visualization
1 Citation (Scopus)
Salinity
Fish
Adenosine Triphosphatases
Fishes
Genes

Disrupted GABAergic facilitation of working memory performance in people with schizophrenia

Ragland, J. D., Maddock, R. J., Hurtado, M. Y., Tanase, C., Lesh, T. A., Niendam, T. A., Carter, C. S. & Ranganath, C., 2020, In : NeuroImage: Clinical. 25, 102127.

Research output: Contribution to journalArticle

Open Access
Short-Term Memory
Schizophrenia
Glutamic Acid
Acids
Magnetic Resonance Spectroscopy

Dopamine metabolism by a monoamine oxidase mitochondrial shuttle activates the electron transport chain

Graves, S. M., Xie, Z., Stout, K. A., Zampese, E., Burbulla, L. F., Shih, J. C., Kondapalli, J., Patriarchi, T., Tian, L., Brichta, L., Greengard, P., Krainc, D., Schumacker, P. T. & Surmeier, D. J., Jan 1 2020, In : Nature Neuroscience. 23, 1, p. 15-20 6 p.

Research output: Contribution to journalArticle

Monoamine Oxidase
Electron Transport
Dopamine
Mitochondrial Membranes
Hydrogen Peroxide

Dosing and Re-Administration of Lentiviral Vector for In Vivo Gene Therapy in Rhesus Monkeys and ADA-Deficient Mice

Carbonaro-Sarracino, D. A., Tarantal, A. F., Lee, C. C. I., Kaufman, M. L., Wandro, S., Jin, X., Martinez, M., Clark, D. N., Chun, K., Koziol, C., Hardee, C. L., Wang, X. & Kohn, D. B., Mar 13 2020, In : Molecular Therapy - Methods and Clinical Development. 16, p. 78-93 16 p.

Research output: Contribution to journalArticle

Open Access
Macaca mulatta
Genetic Therapy
Antibody Formation
Anti-Idiotypic Antibodies
Spleen

Ebola virus disease: An emerging and re-emerging viral threat

Rojas, M., Monsalve, D. M., Pacheco, Y., Acosta-Ampudia, Y., Ramírez-Santana, C., Ansari, A. A., Gershwin, M. E. & Anaya, J. M., Jan 2020, In : Journal of autoimmunity. 106, 102375.

Research output: Contribution to journalReview article

Open Access
Ebola Hemorrhagic Fever
Ebolavirus
Filoviridae
Viruses
Democratic Republic of the Congo

Effects of chronic intranasal oxytocin on behavior and cerebral glucose uptake in juvenile titi monkeys

Arias del Razo, R., Berger, T., Conley, A. J., Freeman, S. M., Goetze, L. R., Jacob, S., Lawrence, R. H., Mendoza, S. P., Rothwell, E. S., Savidge, L. E., Solomon, M., Weinstein, T. A. R., Witczak, L. R. & Bales, K. L., Mar 2020, In : Psychoneuroendocrinology. 113, 104494.

Research output: Contribution to journalArticle

Oxytocin
Haplorhini
Glucose
Parents
Anxiety

Effects of intravitreal injection of human CD34+ bone marrow stem cells in a murine model of diabetic retinopathy

Yazdanyar, A., Zhang, P., Dolf, C., Smit-McBride, Z., Cary, W., Nolta, J. A., Zawadzki, R. J., Marsh-Armstrong, N. & Park, S. S., Jan 2020, In : Experimental Eye Research. 190, 107865.

Research output: Contribution to journalArticle

Open Access
Intravitreal Injections
Diabetic Retinopathy
Bone Marrow Cells
Stem Cells
Retina

Engineered metal oxide nanomaterials inhibit corneal epithelial wound healing in vitro and in vivo

Kim, S., Gates, B. L., Leonard, B. C., Gragg, M. M., Pinkerton, K. E., Van Winkle, L. S., Murphy, C. J., Pyrgiotakis, G., Zhang, Z., Demokritou, P. & Thomasy, S. M., Jan 2020, In : NanoImpact. 17, 100198.

Research output: Contribution to journalArticle

Open Access
Nanostructures
Nanostructured materials
Wound Healing
Oxides
Metals

Environmental persistence and disinfectant susceptibility of Klebsiella pneumoniae recovered from pinnipeds stranded on the California Coast

Soto, E., Abdelrazek, S. M. R., Basbas, C., Duignan, P. J., Rios, C. & Byrne, B. A., Feb 2020, In : Veterinary Microbiology. 241, 108554.

Research output: Contribution to journalArticle

Pinnipedia
Disinfectants
Klebsiella pneumoniae
disinfectants
biofilm

Equine fetal genotyping via aspiration of yolk-sac fluid at 22–28 days of gestation

Ripley, A. M., Penedo, M. C. T., Grahn, R. A., Martinez de Andino, E. V., Walbornn, S. R., Serafini, R., Love, C. C. & Hinrichs, K., Jan 15 2020, In : Theriogenology. 142, p. 34-40 7 p.

Research output: Contribution to journalArticle

Yolk Sac
yolk sac
genotyping
mares
Horses
myeloencephalopathy
Equid Herpesvirus 1
Equid herpesvirus 1
Horses
Genotype

Fat Grafting for Facial Rejuvenation: My Preferred Approach

Pu, L. L. Q., Jan 2020, In : Clinics in Plastic Surgery. 47, 1, p. 19-29 11 p.

Research output: Contribution to journalReview article

Rejuvenation
Fats
Transplants
Graft Survival
Thigh
1 Citation (Scopus)

Functional significance of MAIT cells in psoriatic arthritis

Raychaudhuri, S. K., Abria, C., Mitra, A. & Raychaudhuri, S. P., Jan 1 2020, In : Cytokine. 125, 154855.

Research output: Contribution to journalArticle

Psoriatic Arthritis
T-cells
Interleukin-17
Synovial Fluid
Fluids

Immunohistochemistry and In Situ Hybridization in the Developing Chicken Brain

Tucker, R. P., Ishimaru, T. & Gong, Q., Jan 1 2020, Methods in Molecular Biology. Humana Press Inc., p. 421-437 17 p. (Methods in Molecular Biology; vol. 2047).

Research output: Chapter in Book/Report/Conference proceedingChapter

In Situ Hybridization
Chickens
Immunohistochemistry
Antibodies
Brain

Incidence of Acute, Progressive, and Delayed Proximal Junctional Kyphosis Over an 8-Year Period in Adult Spinal Deformity Patients

Segreto, F. A., Passias, P. G., Lafage, R., Lafage, V., Smith, J. S., Line, B. G., Mundis, G. M., Bortz, C. A., Stekas, N. D., Horn, S. R., Diebo, B. G., Brown, A. E., Ihejirika, Y., Nunley, P. D., Daniels, A. H., Gupta, M. C., Gum, J. L., Hamilton, D. K., Klineberg, E. O., Burton, D. C. & 5 others, Hart, R. A., Schwab, F. J., Bess, S., Shaffrey, C. I. & Ames, C. P., Jan 1 2020, In : Operative neurosurgery (Hagerstown, Md.). 18, 1, p. 75-82 8 p.

Research output: Contribution to journalArticle

Kyphosis
Incidence
Spine
Databases

Insular microbiogeography: Three pathogens as exemplars

Kaufman, J. H., Elkins, C. A., Davis, M., Weis, A. M., Huang, B. C., Mammel, M. K., Patel, I. R., Beck, K. L., Edlund, S., Chambliss, D., Douglas, J., Bianco, S., Kunitomi, M. & Weimer, B. C., Jan 1 2020, In : Current Issues in Molecular Biology. 36, p. 89-108 20 p.

Research output: Contribution to journalArticle

Open Access
Genome
Microbiota
Genes
Microbial Genome
Bacteria
1 Citation (Scopus)

InternalBrace has biomechanical properties comparable to suture button but less rigid than screw in ligamentous lisfranc model

Hopkins, J., Nguyen, K., Heyrani, N., Shelton, T., Kreulen, C., Garcia-Nolen, T., Christiansen, B. A. & Giza, E., Jan 1 2020, In : Journal of Orthopaedics. 17, p. 7-12 6 p.

Research output: Contribution to journalArticle

Open Access
Sutures
Weight-Bearing
Wounds and Injuries

Leptin/adiponectin ratio correlates with hepatic steatosis but not arterial stiffness in nonalcoholic fatty liver disease in Japanese population

Mikami, K., Endo, T., Sawada, N., Igarashi, G., Kimura, M., Hasegawa, T., Iino, C., Tomita, H., Sawada, K., Nakaji, S., Matsuzaka, M., Torok, N. J. & Fukuda, S., Feb 2020, In : Cytokine. 126, 154927.

Research output: Contribution to journalArticle

Vascular Stiffness
Adiponectin
Leptin
Liver
Stiffness

Long noncoding RNA-dependent regulation of vascular smooth muscle cell proliferation and migration in hypertension

Tan, J., Xie, Y., Yao, A., Qin, Y., Li, L., Shen, L., Zhang, X., Xu, C., Jiang, X., Wang, A. & Yan, Z., Jan 2020, In : International Journal of Biochemistry and Cell Biology. 118, 105653.

Research output: Contribution to journalArticle

Long Noncoding RNA
Cell proliferation
Vascular Smooth Muscle
Smooth Muscle Myocytes
Cell Movement
1 Citation (Scopus)

Measuring Relationships Between Proactive Reporting State-level Prescription Drug Monitoring Programs and County-level Fatal Prescription Opioid Overdoses

Cerdá, M., Ponicki, W. R., Smith, N., Rivera-Aguirre, A., Davis, C. S., Marshall, B. D. L., Fink, D. S., Henry, S. G., Castillo-Carniglia, A., Wintemute, G. J., Gaidus, A., Gruenewald, P. J. & Martins, S. S., Jan 1 2020, In : Epidemiology (Cambridge, Mass.). 31, 1, p. 32-42 11 p.

Research output: Contribution to journalArticle

Prescription Drugs
Drug Monitoring
Opioid Analgesics
Prescriptions
Methadone

Microvascular engineering: Dynamic changes in microgel-entrapped vascular cells correlates with higher vasculogenic/angiogenic potential

Torres, A. L., Bidarra, S. J., Vasconcelos, D. P., Barbosa, J. N., Silva, E. A., Nascimento, D. S. & Barrias, C. C., Jan 2020, In : Biomaterials. 228, 119554.

Research output: Contribution to journalArticle

Endothelial cells
Blood Vessels
Endothelial Cells
Stem cells
Mesenchymal Stromal Cells

Necrotizing enterocolitis following diazoxide therapy for persistent neonatal hypoglycemia

Theodorou, C. M. & Hirose, S., Jan 2020, In : Journal of Pediatric Surgery Case Reports. 52, 101356.

Research output: Contribution to journalArticle

Open Access
Diazoxide
Necrotizing Enterocolitis
Hypoglycemia
Beckwith-Wiedemann Syndrome
Therapeutics

Older Adults With Isolated Rib Fractures Do Not Require Routine Intensive Care Unit Admission

Bowman, J. A., Jurkovich, G., Nishijima, D. & Utter, G. H., Jan 1 2020, In : Journal of Surgical Research. 245, p. 492-499 8 p.

Research output: Contribution to journalArticle

Rib Fractures
Intensive Care Units
Critical Care
Abbreviated Injury Scale
Guidelines

Optimizing cell encapsulation condition in ECM-Collagen I hydrogels to support 3D neuronal cultures

Lam, D., Enright, H. A., Peters, S. K. G., Moya, M. L., Soscia, D. A., Cadena, J., Alvarado, J. A., Kulp, K. S., Wheeler, E. K. & Fischer, N. O., Jan 1 2020, In : Journal of Neuroscience Methods. 329, 108460.

Research output: Contribution to journalArticle

Open Access
Hydrogels
Collagen
Cell Survival
Gels
Neurons

P5: Portable Progressive Parallel Processing Pipelines for Interactive Data Analysis and Visualization

Li, J. K. & Ma, K. L., Jan 2020, In : IEEE Transactions on Visualization and Computer Graphics. 26, 1, p. 1151-1160 10 p., 8809730.

Research output: Contribution to journalArticle

Data visualization
Visualization
Pipelines
Processing
Specifications

Phase 2 Trial of Neoadjuvant FOLFIRINOX and Intensity Modulated Radiation Therapy Concurrent With Fixed-Dose Rate-Gemcitabine in Patients With Borderline Resectable Pancreatic Cancer

Tran, N. H., Sahai, V., Griffith, K. A., Nathan, H., Kaza, R., Cuneo, K. C., Shi, J., Kim, E., Sonnenday, C. J., Cho, C. S., Lawrence, T. S. & Zalupski, M. M., Jan 1 2020, In : International Journal of Radiation Oncology Biology Physics. 106, 1, p. 124-133 10 p.

Research output: Contribution to journalArticle

Open Access
gemcitabine
Pancreatic Neoplasms
radiation therapy
Radiotherapy
cancer

Predicting the Occurrence of Postoperative Distal Junctional Kyphosis in Cervical Deformity Patients

Passias, P. G., Horn, S. R., Oh, C., Lafage, R., Lafage, V., Smith, J. S., Line, B., Protopsaltis, T. S., Yagi, M., Bortz, C. A., Segreto, F. A., Alas, H., Diebo, B. G., Sciubba, D. M., Kelly, M. P., Daniels, A. H., Klineberg, E. O., Burton, D. C., Hart, R. A., Schwab, F. J. & 3 others, Bess, S., Shaffrey, C. I. & Ames, C. P., Jan 1 2020, In : Neurosurgery. 86, 1, p. E38-E46

Research output: Contribution to journalArticle

Kyphosis
Osteotomy
Chin
Area Under Curve
Comorbidity

Prevalence of Bartonella sp. in United States military working dogs with infectious endocarditis: a retrospective case–control study

Davis, A. Z., Jaffe, D. A., Honadel, T. E., Lapsley, W. D., Wilber-Raymond, J. L., Kasten, R. W. & Chomel, B. B., Feb 2020, In : Journal of Veterinary Cardiology. 27, p. 1-9 9 p.

Research output: Contribution to journalArticle

Bartonella
endocarditis
Endocarditis
retrospective studies
Retrospective Studies

Semi-supervised training data selection improves seizure forecasting in canines with epilepsy

Nasseri, M., Kremen, V., Nejedly, P., Kim, I., Chang, S. Y., Jo, H. J., Guragain, H., Nelson, N., Patterson, E., Sturges, B. K., Crowe, C. M., Denison, T., Brinkmann, B. H. & Worrell, G. A., Mar 2020, In : Biomedical Signal Processing and Control. 57, 101743.

Research output: Contribution to journalArticle

Electroencephalography
Canidae
Epilepsy
Seizures
Stroke
Autoimmune Hemolytic Anemia
Venous Thromboembolism
Splenectomy
Sepsis
Incidence

Supporting Analysis of Dimensionality Reduction Results with Contrastive Learning

Fujiwara, T., Kwon, O. H. & Ma, K. L., Jan 2020, In : IEEE Transactions on Visualization and Computer Graphics. 26, 1, p. 45-55 11 p., 8805461.

Research output: Contribution to journalArticle

Principal component analysis
Visualization

Susceptibility of larval zebrafish to the seizurogenic activity of GABA type A receptor antagonists

Bandara, S. B., Carty, D. R., Singh, V., Harvey, D. J., Vasylieva, N., Pressly, B., Wulff, H. & Lein, P. J., Jan 2020, In : NeuroToxicology. 76, p. 220-234 15 p.

Research output: Contribution to journalArticle

Open Access
tetramethylenedisulfotetramine
GABA-A Receptor Antagonists
Zebrafish
Picrotoxin
Pentylenetetrazole

Targeting bromodomain protein ANCCA/ATAD2 enhances the efficacy of DNA-damaging chemotherapy agents and radiation

Duan, Z., Andrews, N. P., Chen, C. Z., Fan, M., Wang, J., Shen, J., Li, J. J. & Chen, H. W., Jan 1 2020, In : Oncology Reports. 43, 1, p. 318-327 10 p.

Research output: Contribution to journalArticle

Protein Transport
DNA Damage
Triple Negative Breast Neoplasms
Radiation
Drug Therapy
1 Citation (Scopus)

Temporal expression of cytokines and B-cell phenotypes during mechanical circulatory support

Iyengar, A., Wisniewski, N., Kwon, O. J., Cadeiras, M., Deng, M., Schaenman, J., Korin, Y., Shemin, R., Reed, E. & Kwon, M., Jan 2020, In : Journal of Thoracic and Cardiovascular Surgery. 159, 1, p. 155-163 9 p.

Research output: Contribution to journalArticle

HLA Antigens
B-Lymphocytes
Cytokines
Phenotype
Antibodies

The Effect of Socioeconomic Status on Treatment and Mortality in Non-Small Cell Lung Cancer Patients

Ebner, P. J., Ding, L., Kim, A. W., Atay, S. M., Yao, M. J., Toubat, O., McFadden, P. M., Balekian, A. A. & David, E. A., Jan 2020, In : Annals of Thoracic Surgery. 109, 1, p. 225-232 8 p.

Research output: Contribution to journalArticle

Social Class
Non-Small Cell Lung Carcinoma
Mortality
Therapeutics
Survival

Toxic effects of fluridone on early developmental stages of Japanese Medaka (Oryzias latipes)

Jin, J., Kurobe, T., Hammock, B. G., Lam, C. H., Lin, L. & Teh, S. J., Jan 15 2020, In : Science of the Total Environment. 700, 134495.

Research output: Contribution to journalArticle

Poisons
developmental stage
Genes
Fish
Toxicity
2019

14C-Cobalamin Absorption from Endogenously Labeled Chicken Eggs Assessed in Humans Using Accelerator Mass Spectrometry

Garrod, M. G., Rossow, H. A., Calvert, C. C., Miller, J. W., Green, R., Buchholz, B. A. & Allen, L. H., Sep 8 2019, In : Nutrients. 11, 9

Research output: Contribution to journalArticle

Open Access
chicken eggs
vitamin B12
Vitamin B 12
Eggs
Biological Availability

2019: an update from the Editor-in-Chief

Cherry, S. R., Apr 8 2019, In : Physics in medicine and biology. 64, 8, 1 p.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

2D Visualization of the Psoriasis Transcriptome Fails to Support the Existence of Dual-Secreting IL-17A/IL-22 Th17 T Cells

Le, S. T., Merleev, A. A., Luxardi, G., Shimoda, M., Adamopoulos, I., Tsoi, L. C., Wang, J. Z., Alexanian, C., Raychaudhuri, S. P., Hwang, S. T., Gudjonsson, J., Marusina, A. I. & Maverakis, E. M., Jan 1 2019, In : Frontiers in immunology. 10, 1 p.

Research output: Contribution to journalArticle

Open Access
Th17 Cells
Interleukin-17
Transcriptome
Psoriasis
T-Lymphocytes
3 Citations (Scopus)

3D dSTORM imaging reveals novel detail of ryanodine receptor localization in rat cardiac myocytes

Shen, X., van den Brink, J., Hou, Y., Colli, D., Le, C., Kolstad, T. R., MacQuaide, N., Carlson, C. R., Kekenes-Huskey, P. M., Edwards, A. G., Soeller, C. & Louch, W. E., Jan 15 2019, In : Journal of Physiology. 597, 2, p. 399-418 20 p.

Research output: Contribution to journalArticle

Open Access
Ryanodine Receptor Calcium Release Channel
Cardiac Myocytes
Microscopy
Architectural Accessibility
Calibration
5 Citations (Scopus)

3D-printed breast phantom for multi-purpose and multi-modality imaging

He, Y., Liu, Y., Dyer, B. A., Boone, J. M., Liu, S., Chen, T., Zheng, F., Zhu, Y., Sun, Y., Rong, Y. & Qiu, J., Jan 1 2019, In : Quantitative Imaging in Medicine and Surgery. 9, 1, p. 63-74 12 p.

Research output: Contribution to journalArticle

Breast
Calcinosis
Magnetic Resonance Imaging
Quality Control
Technology