Find Research Outputs


2019: an update from the Editor-in-Chief

Cherry, S. R., Apr 8 2019, In : Physics in medicine and biology. 64, 8, 1 p.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

3D-printed breast phantom for multi-purpose and multi-modality imaging

He, Y., Liu, Y., Dyer, B. A., Boone, J. M., Liu, S., Chen, T., Zheng, F., Zhu, Y., Sun, Y., Rong, Y. & Qiu, J., Jan 1 2019, In : Quantitative Imaging in Medicine and Surgery. 9, 1, p. 63-74 12 p.

Research output: Contribution to journalArticle

Magnetic Resonance Imaging
Quality Control

A 17-gene Panel for Prediction of Adverse Prostate Cancer Pathologic Features: Prospective Clinical Validation and Utility

Eggener, S., Karsh, L. I., Richardson, T., Shindel, A. W., Lu, R., Rosenberg, S., Goldfischer, E., Korman, H., Bennett, J., Newmark, J. & Denes, B. S., Jan 1 2019, In : Urology.

Research output: Contribution to journalArticle

Prostatic Neoplasms
Neoplasm Grading

A 51-Year-Old Man With Unresolved Pulmonary Infiltrates Following Streptococcus pneumoniae Pneumonia

Pugashetti, J. V., Adams, J. Y., Zeki, A. & Kuhn, B., Feb 1 2019, In : Chest. 155, 2, p. e47-e50

Research output: Contribution to journalArticle

Streptococcus pneumoniae

AAST Critical Care Committee clinical consensus: ECMO, nutrition

Zonies, D., Codner, P., Park, P., Martin, N. D., Lissauer, M., Evans, S., Cocanour, C. S. & Brasel, K., Mar 1 2019, In : Trauma Surgery and Acute Care Open. 4, 1, e000304.

Research output: Contribution to journalArticle

Open Access
Critical Care
Wounds and Injuries
Extracorporeal Membrane Oxygenation
Critical Illness

A blood-based signature of cerebrospinal fluid Aβ 1–42 status

Alzheimer’s Disease Metabolomics Consortium & Alzheimer’s Disease Neuroimaging Initiative, Dec 1 2019, In : Scientific Reports. 9, 1, 4163.

Research output: Contribution to journalArticle

Open Access
Cerebrospinal Fluid
Alzheimer Disease
Positron-Emission Tomography
Area Under Curve

A Bump-Hole Approach for Directed RNA Editing

Monteleone, L. R., Matthews, M. M., Palumbo, C. M., Thomas, J. M., Zheng, Y., Chiang, Y., Fisher, A. J. & Beal, P. A., Feb 21 2019, In : Cell Chemical Biology. 26, 2, p. 269-277.e5

Research output: Contribution to journalArticle

RNA Editing
Guide RNA
Adenosine Deaminase

A Case for n-of-1 Trials - Reply

Kravitz, R. L., Sim, I. & Duan, N., Mar 1 2019, In : JAMA Internal Medicine. 179, 3, 1 p.

Research output: Contribution to journalLetter

1 Citation (Scopus)

Acceptance versus reappraisal: Behavioral, autonomic, and neural effects

Goldin, P. R., Moodie, C. A. & Gross, J. J., Jan 1 2019, (Accepted/In press) In : Cognitive, Affective and Behavioral Neuroscience.

Research output: Contribution to journalArticle

Autonomic Agents
Respiratory Rate
Heart Rate

Acinetobacter baumannii OxyR Regulates the Transcriptional Response to Hydrogen Peroxide

Juttukonda, L. J., Green, E. R., Lonergan, Z. R., Heffern, M., Chang, C. J. & Skaar, E. P., Jan 1 2019, In : Infection and Immunity. 87, 1

Research output: Contribution to journalArticle

Acinetobacter baumannii
Hydrogen Peroxide
Acinetobacter Infections

A Clinical Prediction Rule to Identify Febrile Infants 60 Days and Younger at Low Risk for Serious Bacterial Infections

Kuppermann, N., Dayan, P. S., Levine, D. A., Vitale, M., Tzimenatos, L. S., Tunik, M. G., Saunders, M., Ruddy, R. M., Roosevelt, G., Rogers, A. J., Powell, E. C., Nigrovic, L. E., Muenzer, J., Linakis, J. G., Grisanti, K., Jaffe, D. M., Hoyle, J. D., Greenberg, R., Gattu, R., Cruz, A. T. & 16 othersCrain, E. F., Cohen, D. M., Brayer, A., Borgialli, D., Bonsu, B., Browne, L., Blumberg, S., Bennett, J. E., Atabaki, S. M., Anders, J., Alpern, E. R., Miller, B., Casper, T. C., Dean, J. M., Ramilo, O. & Mahajan, P., Apr 1 2019, In : JAMA Pediatrics. 173, 4, p. 342-351 10 p.

Research output: Contribution to journalArticle

Decision Support Techniques
Bacterial Infections
Bacterial Meningitides

A Combination Flap for Repair of Eclabium

Joo, J. S., Petukhova, T. & Eisen, D. B., Feb 1 2019, In : Dermatologic surgery : official publication for American Society for Dermatologic Surgery [et al.]. 45, 2, p. 291-293 3 p.

Research output: Contribution to journalArticle

A combined hiPSC-derived endothelial cell and in vitro microfluidic platform for assessing biomaterial-based angiogenesis

Natividad-Diaz, S. L., Browne, S., Jha, A. K., Ma, Z., Hossainy, S., Kurokawa, Y. K., George, S. & Healy, K. E., Feb 1 2019, In : Biomaterials. 194, p. 73-83 11 p.

Research output: Contribution to journalArticle

Induced Pluripotent Stem Cells
Endothelial cells
Biocompatible Materials
Stem cells

A comparison of automated segmentation and manual tracing in estimating hippocampal volume in ischemic stroke and healthy control participants

Khlif, M. S., Egorova, N., Werden, E., Redolfi, A., Bocardi, M., DeCarli, C., Fletcher, E., Singh, B., Li, Q., Bird, L. & Brodtmann, A., Jan 1 2019, (Accepted/In press) In : NeuroImage: Clinical. 101581.

Research output: Contribution to journalArticle

Healthy Volunteers
Stroke Volume

A Comparison of Geriatric Hip Fracture Databases

Shelton, T., Hecht, G., Slee, C. & Wolinsky, P. R., Feb 1 2019, In : The Journal of the American Academy of Orthopaedic Surgeons. 27, 3, p. e135-e141

Research output: Contribution to journalArticle

Hip Fractures
Quality Improvement
Wounds and Injuries
Acute Coronary Syndrome
Percutaneous Coronary Intervention
Accelerated Idioventricular Rhythm

Acute infection and subsequent subclinical reactivation of herpes simplex virus 2 after vaginal inoculation of rhesus macaques

Lo, M., Zhu, J., Hansen, S. G., Carroll, T., Zuend, C. F., Nöel-Romas, L., Ma, Z. M., Fritts, L., Huang, M. L., Sun, S., Huang, Y., Koelle, D. M., Picker, L. J., Burgener, A., Corey, L. & Miller, C. J., Jan 1 2019, In : Journal of Virology. 93, 2, e01574-18.

Research output: Contribution to journalArticle

Human herpesvirus 2
Asymptomatic Infections
Human Herpesvirus 2
Macaca mulatta

Acute lead arsenate poisoning in beef cattle in Uruguay

Schild, C. O., Giannitti, F., Medeiros, R. M. T., da Silva Silveira, C., Caffarena, R. D., Poppenga, R. H. & Riet-Correa, F., Jan 1 2019, In : Journal of Veterinary Diagnostic Investigation.

Research output: Contribution to journalArticle

lead arsenate
Lead Poisoning
lesions (animal)
beef cattle

Adaptive task difficulty influences neural plasticity and transfer of training

Flegal, K. E., Ragland, J. D. & Ranganath, C., Mar 1 2019, In : NeuroImage. 188, p. 111-121 11 p.

Research output: Contribution to journalArticle

Neuronal Plasticity
Short-Term Memory
Episodic Memory

A deep learning model to predict a diagnosis of Alzheimer disease by using 18 F-FDG PET of the brain

Ding, Y., Sohn, J. H., Kawczynski, M. G., Trivedi, H., Harnish, R., Jenkins, N. W., Lituiev, D., Copeland, T. P., Aboian, M. S., Aparici, C. M., Behr, S. C., Flavell, R. R., Huang, S. Y., Zalocusky, K. A., Nardo, L., Seo, Y., Hawkins, R. A., Pampaloni, M. H., Hadley, D. & Franc, B. L., Mar 1 2019, In : RADIOLOGY. 290, 3, p. 456-464 9 p.

Research output: Contribution to journalArticle

Fluorodeoxyglucose F18
Alzheimer Disease
ROC Curve

A demonstration of modularity, reuse, reproducibility, portability and scalability for modeling and simulation of cardiac electrophysiology using Kepler Workflows

Yang, P. C., Purawat, S., Ieong, P. U., Jeng, M. T., DeMarco, K. R., Vorobyov, I., McCulloch, A. D., Altintas, I., Amaro, R. E. & Clancy, C. E., Mar 1 2019, In : PLoS computational biology. 15, 3, p. e1006856

Research output: Contribution to journalArticle

Open Access
Cardiac Electrophysiology

Advances in therapeutic endoscopy

Tejaswi, S. L., Girotra, M., Lima, J. P. & Tabibian, J. H., Jan 1 2019, In : Gastroenterology Research and Practice. 2019, 6253837.

Research output: Contribution to journalEditorial

Open Access

Afatinib With Pembrolizumab for Treatment of Patients With Locally Advanced/Metastatic Squamous Cell Carcinoma of the Lung: The LUX-Lung IO/KEYNOTE 497 Study Protocol

Levy, B., Paz-Ares, L., Bennouna, J., Felip, E., Abreu, D. R., Isla, D., Barlesi, F., Molinier, O., Madelaine, J., Audigier-Valette, C., Kim, S. W., Kim, H. R., Ozguroglu, M., Erman, M., Badin, F. B., Mekhail, T. M., Scheff, R., Chisamore, M. J., Sadrolhefazi, B. & Riess, J., Jan 1 2019, In : Clinical lung cancer.

Research output: Contribution to journalArticle

Open Access
Squamous Cell Carcinoma
Epidermal Growth Factor Receptor

Affiliation and disease risk: social networks mediate gut microbial transmission among rhesus macaques

Balasubramaniam, K. N., Beisner, B., Hubbard, J. A., Vandeleest, J. J., Atwill, E. R. & Mccowan, B., May 1 2019, In : Animal Behaviour. 151, p. 131-143 13 p.

Research output: Contribution to journalArticle

social networks
social network
Macaca mulatta
intestinal microorganisms

Affinity selection and sequencing

Lam, K., Apr 1 2019, In : Nature Chemical Biology. 15, 4, p. 320-321 2 p.

Research output: Contribution to journalArticle

Peptide Library
Tandem Mass Spectrometry
Gel Chromatography
Head and Neck Neoplasms
Practice Guidelines

Algae-derived β-glucan enhanced gut health and immune responses of weaned pigs experimentally infected with a pathogenic E. coli

Kim, K., Ehrlich, A., Perng, V., Chase, J. A., Raybould, H. E., Li, X., Atwill, E. R., Whelan, R., Sokale, A. & Liu, Y., Feb 1 2019, In : Animal Feed Science and Technology. 248, p. 114-125 12 p.

Research output: Contribution to journalArticle

digestive system
immune response
Escherichia coli

All-in-One Iontronic Sensing Paper

Li, S., Pan, N., Zhu, Z., Li, R., Li, B., Chu, J., Li, G., Chang, Y. & Pan, T., Jan 1 2019, (Accepted/In press) In : Advanced Functional Materials. 1807343.

Research output: Contribution to journalArticle


Alternative splicing of MXD3 and its regulation of MXD3 levels in glioblastoma

Ngo, T., Corrales, A., Bourne, T., Elmojahid, S., Lam, K. & Diaz, E. D., Jan 1 2019, In : Frontiers in Molecular Biosciences. 6, FEB, 00005.

Research output: Contribution to journalArticle

Open Access
Cell proliferation
Alternative Splicing
3' Untranslated Regions

Alveolar macrophage reaction to PM 2.5 of hazy day in vitro: Evaluation methods and mitochondrial screening to determine mechanisms of biological effect

Wei, H., Zhang, Y., Song, S., Pinkerton, K. E., Geng, H. & Ro, C. U., Jun 15 2019, In : Ecotoxicology and Environmental Safety. 174, p. 566-573 8 p.

Research output: Contribution to journalArticle

Polycyclic Aromatic Hydrocarbons
Alveolar Macrophages
Mitochondrial Dynamics
Polycyclic aromatic hydrocarbons
4 Citations (Scopus)

Amino Acid Dysregulation Metabotypes: Potential Biomarkers for Diagnosis and Individualized Treatment for Subtypes of Autism Spectrum Disorder

Smith, A. M., King, J. J., West, P. R., Ludwig, M. A., Donley, E. L. R., Burrier, R. E. & Amaral, D. G., Feb 15 2019, In : Biological Psychiatry. 85, 4, p. 345-354 10 p.

Research output: Contribution to journalArticle

Amino Acids
Branched Chain Amino Acids
Autistic Disorder

Amino acid status in dogs with protein-losing nephropathy

Parker, V. J., Fascetti, A. J. & Klamer, B. G., Jan 1 2019, In : Journal of Veterinary Internal Medicine.

Research output: Contribution to journalArticle

Open Access
kidney diseases
Amino Acids
amino acids

A missense mutation in damage-specific DNA binding protein 2 is a genetic risk factor for ocular squamous cell carcinoma in Belgian horses

Knickelbein, K. E., Utter, M., Singer-Berk, M., Reilly, C. M., Clode, A. B., Famula, T. R., Michau, T. M. & Bellone, R., Jan 1 2019, In : Equine veterinary journal.

Research output: Contribution to journalArticle

Belgian (horse breed)
missense mutation
DNA-binding proteins
squamous cell carcinoma
DNA-Binding Proteins

A Modern Reaffirmation of Surgery as the Optimal Treatment for Solitary Fibrous Tumors of the Pleura

Yao, M. J., Ding, L., Atay, S. M., Toubat, O., Ebner, P., David, E., McFadden, P. M. & Kim, A. W., Jan 1 2019, (Accepted/In press) In : Annals of Thoracic Surgery.

Research output: Contribution to journalArticle

Pleural Solitary Fibrous Tumor

A multicenter study of ketamine effects on functional connectivity: Large scale network relationships, hubs and symptom mechanisms

Fleming, L. M., Javitt, D. C., Carter, C. S., Kantrowitz, J. T., Girgis, R. R., Kegeles, L. S., Ragland, J. D., Maddock, R. J., Lesh, T. A., Tanase, C., Robinson, J., Potter, W. Z., Carlson, M., Wall, M. M., Choo, T. H., Grinband, J., Lieberman, J., Krystal, J. H. & Corlett, P. R., Jan 1 2019, In : NeuroImage: Clinical. 22, 101739.

Research output: Contribution to journalArticle

Open Access
Multicenter Studies
Prefrontal Cortex
Excitatory Amino Acid Antagonists

Analgesic Use and Ovarian Cancer Risk: An Analysis in the Ovarian Cancer Cohort Consortium

Ovarian Cancer Cohort Consortium (OC3), Feb 1 2019, In : Journal of the National Cancer Institute. 111, 2, p. 137-145 9 p.

Research output: Contribution to journalArticle

Open Access
Ovarian Neoplasms
Confidence Intervals
Non-Steroidal Anti-Inflammatory Agents

Analysis of insecticide exposure in California hummingbirds using liquid chromatography-mass spectrometry

Graves, E. E., Jelks, K. A., Foley, J. E., Filigenzi, M. S., Poppenga, R. H., Ernest, H. B., Melnicoe, R. & Tell, L. A., Jan 1 2019, In : Environmental Science and Pollution Research.

Research output: Contribution to journalArticle

Liquid chromatography
Liquid Chromatography

An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar

Grubaugh, N. D., Gangavarapu, K., Quick, J., Matteson, N. L., De Jesus, J. G., Main, B., Tan, A. L., Paul, L. M., Brackney, D. E., Grewal, S., Gurfield, N., Van Rompay, K. K. A., Isern, S., Michael, S. F., Schneider, L. L., Loman, N. J. & Andersen, K. G., Jan 8 2019, In : Genome Biology. 20, 1, 8.

Research output: Contribution to journalArticle

West Nile virus

A natural energy absorbent polymer composite: The equine hoof wall

Huang, W., Yaraghi, N. A., Yang, W., Velazquez-Olivera, A., Li, Z., Ritchie, R. O., Kisailus, D., Stover, S. M. & McKittrick, J., Jan 1 2019, In : Acta Biomaterialia.

Research output: Contribution to journalArticle

Hoof and Claw
Energy absorption

An atypical presentation of multi-systemic B-cell lymphoma in a horse

Torrent, A., Kilcoyne, I., Johnson, A., Affolter, V. K., Berryhill, E. & Aleman, M. R., Mar 1 2019, In : The Canadian veterinary journal = La revue veterinaire canadienne. 60, 3, p. 300-304 5 p.

Research output: Contribution to journalArticle

muscular atrophy
Muscular Atrophy
B-Cell Lymphoma
limbs (animal)

An economic analysis of a contingency model utilising vaccination for the control of equine influenza in a non-endemic country

Rosanowski, S. M., Carpenter, T., Adamson, D., Rogers, C. W., Pearce, P., Burns, M. & Cogger, N., Jan 1 2019, In : PLoS One. 14, 1, e0210885.

Research output: Contribution to journalArticle

equine influenza
Economic analysis
economic analysis
Human Influenza
Open Access
Epithelial Cells
Adenosine Triphosphate
Cell Movement

A Neural Circuit Mechanism for Encoding Aversive Stimuli in the Mesolimbic Dopamine System

de Jong, J. W., Afjei, S. A., Pollak Dorocic, I., Peck, J. R., Liu, C., Kim, C. K., Tian, L., Deisseroth, K. & Lammel, S., Jan 2 2019, In : Neuron. 101, 1, p. 133-151.e7

Research output: Contribution to journalArticle

Dopaminergic Neurons
Reinforcement (Psychology)
Open Access
reaction chemistry
enzymatic reactions
active sites
Catalytic Domain

A new hope for early psychosis care: The evolving landscape of digital care tools

Torous, J., Woodyatt, J., Keshavan, M. & Tully, L., May 1 2019, In : British Journal of Psychiatry. 214, 5, p. 269-272 4 p.

Research output: Contribution to journalArticle

Biomedical Technology
Psychotic Disorders
Health Priorities
Mental Health
1 Citation (Scopus)

An exploratory longitudinal study of social and language outcomes in children with autism in bilingual home environments

Zhou, V., Munson, J. A., Greenson, J., Hou, Y., Rogers, S. J. & Estes, A. M., Feb 1 2019, In : Autism. 23, 2, p. 394-404 11 p.

Research output: Contribution to journalArticle

Autistic Disorder
Longitudinal Studies
Group Homes

Angry and fearful face conflict effects in post-traumatic stress disorder

Ashley, V. & Swick, D., Feb 5 2019, In : Frontiers in Psychology. 10, FEB, 136.

Research output: Contribution to journalArticle

Post-Traumatic Stress Disorders
Facial Expression
Conflict (Psychology)
Self Report

An introduction to hardware, software, and other information technology needs of biomedical biobanks

Im, K., Gui, D. & Yong, W. H., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 17-29 13 p. (Methods in Molecular Biology; vol. 1897).

Research output: Chapter in Book/Report/Conference proceedingChapter

Biomedical Technology
Biomedical Research
Translational Medical Research