Sharif S Aly, PhD; MPVM

Associate Professor

  • 550 Citations
  • 14 h-Index
20052020

Research output per year

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Research Output

  • 550 Citations
  • 14 h-Index
  • 59 Article
  • 1 Review article
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Article
2020

Bayesian estimation of diagnostic accuracy of fecal culture and PCR-based tests for the detection of Salmonella enterica in California cull dairy cattle

Adaska, J. M., Ekong, P. S., Clothier, K. A., Williams, D. R., Rossitto, P. V., Lehenbauer, T. W., Atwill, E. R., Li, X. & Aly, S. S., Jan 1 2020, In : PeerJ. 2020, 1, 8310.

Research output: Contribution to journalArticle

Open Access
2019

Association between herd management practices and antimicrobial resistance in Salmonella spp. from cull dairy cattle in Central California

Pereira, R., Williams, D. R., Rossitto, P., Adaska, J., Okello, E., Champagne, J., Lehenbauer, T. W., Li, X., Chase, J., Nguyen, T., Pires, A. F. A., Atwill, E. R. & Aly, S. S., Jan 1 2019, In : PeerJ. 2019, 3, e6546.

Research output: Contribution to journalArticle

Open Access

Association of plasma haptoglobin concentration and other biomarkers with bovine respiratory disease status in pre-weaned dairy calves

Moisá, S. J., Aly, S. S., Lehenbauer, T. W., Love, W. J., Rossitto, P. V., Van Eenennaam, A. L., Trombetta, S. C., Bortoluzzi, E. M. & Hulbert, L. E., Jan 1 2019, In : Journal of Veterinary Diagnostic Investigation. 31, 1, p. 40-46 7 p.

Research output: Contribution to journalArticle

2 Scopus citations

Bovine respiratory disease (BRD) cause-specific and overall mortality in preweaned calves on California dairies: The BRD 10K study

Dubrovsky, S. A., Van Eenennaam, A. L., Karle, B. M., Rossitto, P. V., Lehenbauer, T. W. & Aly, S. S., Jan 1 2019, In : Journal of Dairy Science.

Research output: Contribution to journalArticle

3 Scopus citations

Development and comparison of loop-mediated isothermal amplification and quantitative polymerase chain reaction assays for the detection of Mycoplasma bovis in milk

Appelt, S., Aly, S. S., Tonooka, K., Glenn, K., Xue, Z., Lehenbauer, T. W. & Marco, M. L., Jan 1 2019, (Accepted/In press) In : Journal of Dairy Science.

Research output: Contribution to journalArticle

2 Scopus citations

Development of a clinical scoring system for bovine respiratory disease in weaned dairy calves

Maier, G., Rowe, J. D., Lehenbauer, T. W., Karle, B. M., Williams, D. R., Champagne, J. D. & Aly, S. S., Jan 1 2019, In : Journal of Dairy Science.

Research output: Contribution to journalArticle

Effectiveness of zinc supplementation on diarrhea and average daily gain in preweaned dairy calves: A double-blind, blockrandomized, placebo-controlled clinical trial

Feldmann, H. R., Williams, D. R., Champagne, J. D., Lehenbauer, T. W. & Aly, S. S., Jan 1 2019, In : PloS one. 14, 7, e0219321.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Environmental sampling to assess the bioburden of Mycobacterium avium subspecies paratuberculosis in drylot pens on California dairies

Chamchoy, T., Williams, D. R., Adaska, J. M., Anderson, R. J. & Aly, S. S., Jan 1 2019, In : PeerJ. 2019, 11, e8081.

Research output: Contribution to journalArticle

Open Access

Epidemiology of bovine respiratory disease (BRD) in preweaned calves on California dairies: The BRD 10K study

Dubrovsky, S. A., Van Eenennaam, A. L., Karle, B. M., Rossitto, P. V., Lehenbauer, T. W. & Aly, S. S., Jan 1 2019, In : Journal of Dairy Science.

Research output: Contribution to journalArticle

7 Scopus citations

Evaluation of four commercial tests for detecting ceftiofur in waste milk bulk tank samples

Belmar, M., Aly, S., Karle, B. M. & Pereira, R. V., Jan 1 2019, In : PloS one. 14, 11, e0224884.

Research output: Contribution to journalArticle

Open Access

Management factors associated with bovine respiratory disease in preweaned calves on California dairies: The BRD 100 study

Maier, G., Love, W. J., Karle, B. M., Dubrovsky, S. A., Williams, D. R., Champagne, J. D., Anderson, R. J., Rowe, J. D., Lehenbauer, T. W., Van Eenennaam, A. L. & Aly, S. S., Jan 1 2019, In : Journal of Dairy Science.

Research output: Contribution to journalArticle

4 Scopus citations

Molecular epidemiology of coagulase-negative Staphylococcus species isolated at different lactation stages from dairy cattle in the United States

Jenkins, S. N., Okello, E., Rossitto, P. V., Lehenbauer, T. W., Champagne, J., Penedo, M. C. T., Arruda, A. G., Godden, S., Rapnicki, P., Gorden, P. J., Timms, L. L. & Aly, S. S., Jan 1 2019, In : PeerJ. 2019, 5, e6749.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Preweaning cost of bovine respiratory disease (BRD) and cost-benefit of implementation of preventative measures in calves on California dairies: The BRD 10K study

Dubrovsky, S. A., Van Eenennaam, A. L., Aly, S. S., Karle, B. M., Rossitto, P. V., Overton, M. W., Lehenbauer, T. W. & Fadel, J. G., Jan 1 2019, (Accepted/In press) In : Journal of Dairy Science.

Research output: Contribution to journalArticle

1 Scopus citations

Risk factors affecting dairy cattle protective grouping behavior, commonly known as bunching, against Stomoxys calcitrans (L.) on California dairies

El Ashmawy, W. R., Williams, D. R., Gerry, A. C., Champagne, J. D., Lehenbauer, T. W. & Aly, S. S., Jan 1 2019, In : PloS one. 14, 11, e0224987.

Research output: Contribution to journalArticle

Open Access
2018

A nested compartmental model to assess the efficacy of paratuberculosis control measures on U.S. Dairy farms

Konboon, M., Bani-Yaghoub, M., Pithua, P. O., Rhee, N. & Aly, S. S., Oct 1 2018, In : PLoS One. 13, 10, e0203190.

Research output: Contribution to journalArticle

2 Scopus citations

Effectiveness of control and preventive measures influenced by pathogen trait evolution: Example of Escherichia coli O157:H7

Bani-Yaghoub, M., Wang, X., Pithua, P. O. & Aly, S. S., Jan 1 2018, (Accepted/In press) In : Journal of Computational and Applied Mathematics.

Research output: Contribution to journalArticle

Effect of the environment on the risk of respiratory disease in preweaning dairy calves during summer months

Louie, A. P., Rowe, J. D., Love, W. J., Lehenbauer, T. W. & Aly, S. S., Nov 1 2018, In : Journal of Dairy Science. 101, 11, p. 10230-10247 18 p.

Research output: Contribution to journalArticle

1 Scopus citations

Multidrug residues and antimicrobial resistance patterns in waste milk from dairy farms in Central California

Tempini, P. N., Aly, S. S., Karle, B. M. & Pereira, R. V. V., Jan 1 2018, (Accepted/In press) In : Journal of Dairy Science.

Research output: Contribution to journalArticle

4 Scopus citations

Regional management practices and prevalence of bovine respiratory disease in California's preweaned dairy calves

Karle, B. M., Maier, G., Love, W. J., Dubrovsky, S. A., Williams, D. R., Anderson, R. J., Van Eenennaam, A. L., Lehenbauer, T. W. & Aly, S. S., Jan 1 2018, (Accepted/In press) In : Journal of Dairy Science.

Research output: Contribution to journalArticle

4 Scopus citations
2017

Agreement Among 4 Sampling Methods to Identify Respiratory Pathogens in Dairy Calves with Acute Bovine Respiratory Disease

Doyle, D., Credille, B., Lehenbauer, T. W., Berghaus, R., Aly, S. S., Champagne, J., Blanchard, P. C., Crossley, B., Berghaus, L., Cochran, S. & Woolums, A., 2017, (Accepted/In press) In : Journal of Veterinary Internal Medicine.

Research output: Contribution to journalArticle

10 Scopus citations

Cecal infarction in neonatal calves: a retrospective study

Adaska, J. M., Moeller, R. B., Blanchard, P. C. & Aly, S. S., Mar 1 2017, In : Journal of Veterinary Diagnostic Investigation. 29, 2, p. 242-244 3 p.

Research output: Contribution to journalArticle

1 Scopus citations

Whole-genome sequencing and concordance between antimicrobial susceptibility genotypes and phenotypes of bacterial isolates associated with bovine respiratory disease

Owen, J. R., Noyes, N., Young, A. E., Prince, D. J., Blanchard, P. C., Lehenbauer, T. W., Aly, S. S., Davis, J. H., O'Rourke, S. M., Abdo, Z., Belk, K., Miller, M. R., Morley, P. & Van Eenennaam, A. L., Sep 1 2017, In : G3: Genes, Genomes, Genetics. 7, 9, p. 3059-3071 13 p.

Research output: Contribution to journalArticle

3 Scopus citations
2016

Epidemiology of Salmonella sp. in California cull dairy cattle: Prevalence of fecal shedding and diagnostic accuracy of pooled enriched broth culture of fecal samples

Abuaboud, O., Adaska, J. M., Williams, D. R., Rossitto, P. V., Champagne, J. D., Lehenbauer, T. W., Atwill, E. R., Li, X. & Aly, S. S., 2016, In : PeerJ. 2016, 8, e2386.

Research output: Contribution to journalArticle

6 Scopus citations

Investigation of Anaplasma marginale seroprevalence in a traditionally managed large California beef herd

Tucker, T. R., Aly, S. S., Maas, J., Davy, J. S. & Foley, J. E., 2016, In : Veterinary Medicine International. 2016, 6186078.

Research output: Contribution to journalArticle

1 Scopus citations

Prevalence and level of enterohemorrhagic escherichia coli in culled dairy cows at harvest

Stromberg, Z. R., Lewis, G. L., Aly, S. S., Lehenbauer, T. W., Bosilevac, J. M., Cernicchiaro, N. & Moxley, R. A., Mar 1 2016, In : Journal of Food Protection. 79, 3, p. 421-431 11 p.

Research output: Contribution to journalArticle

10 Scopus citations
13 Scopus citations

Survey of management practices related to bovine respiratory disease in preweaned calves on California dairies

Love, W. J., Lehenbauer, T. W., Karle, B. M., Hulbert, L. E., Anderson, R. J., Van Eenennaam, A. L., Farver, T. B. & Aly, S. S., Feb 1 2016, In : Journal of Dairy Science. 99, 2, p. 1483-1494 12 p.

Research output: Contribution to journalArticle

14 Scopus citations
2015
13 Scopus citations
2 Scopus citations

Single pathogen challenge with agents of the bovine respiratory disease complex

Bovine Respiratory Disease Complex Coordinated Agricultural Project Research Team, Nov 1 2015, In : PLoS One. 10, 11, e0142479.

Research output: Contribution to journalArticle

25 Scopus citations
2014

Agreement between bovine respiratory disease scoring systems for pre-weaned dairy calves

Aly, S. S., Love, W. J., Williams, D. R., Lehenbauer, T. W., Van Eenennaam, A., Drake, C., Kass, P. H. & Farver, T. B., Dec 28 2014, In : Animal health research reviews / Conference of Research Workers in Animal Diseases. 15, 2, p. 148-150 3 p.

Research output: Contribution to journalArticle

5 Scopus citations
6 Scopus citations

Blood calcium dynamics after prophylactic treatment of subclinical hypocalcemia with oral or intravenous calcium

Blanc, C. D., Van der List, M., Aly, S. S., Rossow, H. A. & Silva Del Rio, N., Nov 1 2014, In : Journal of Dairy Science. 97, 11, p. 6901-6906 6 p.

Research output: Contribution to journalArticle

20 Scopus citations

Comparison between low-dose, high-sort and high-dose, low-sort semen on conception and calf sex ratio in Jersey heifers and cows

Lucena, J. A., Kenyon, A. G., Reynolds, J. P., Moreno, J. F., Lenz, R. W., Carroll, D., Lehenbauer, T. W., Champagne, J. D. & Aly, S. S., Mar 2014, In : Journal of Dairy Science. 97, 3, p. 1782-1789 8 p.

Research output: Contribution to journalArticle

6 Scopus citations
18 Scopus citations

Development of a novel clinical scoring systemfor on-farmdiagnosis of bovine respiratory disease in pre-weaned dairy calves

Love, W. J., Lehenbauer, T. W., Kass, P. H., Van Eenennaam, A. L. & Aly, S. S., 2014, In : PeerJ. 2013, 1, 238.

Research output: Contribution to journalArticle

39 Scopus citations

Effect of three colostrum diets on passive transfer of immunity and preweaning health in calves on a California dairy following colostrum management training

Williams, D. R., Pithua, P., Garcia, A., Champagne, J., Haines, D. M. & Aly, S. S., 2014, In : Veterinary Medicine International. 2014, 698741.

Research output: Contribution to journalArticle

9 Scopus citations
6 Scopus citations

Reliability of environmental sampling culture results using the negative binomial intraclass correlation coefficient

Aly, S. S., Zhao, J., Li, B. & Jiang, J., 2014, In : SpringerPlus. 3, 1, p. 1-7 7 p.

Research output: Contribution to journalArticle

Results of the BRD CAP project: progress toward identifying genetic markers associated with BRD susceptibility

Van Eenennaam, A., Neibergs, H., Seabury, C., Taylor, J., Wang, Z., Scraggs, E., Schnabel, R. D., Decker, J., Wojtowicz, A., Aly, S. S., Davis, J., Blanchard, P. C., Crossley, B., Rossitto, P., Lehenbauer, T. W., Hagevoort, R., Chavez, E., Neibergs, J. S. & Womack, J. E., Dec 1 2014, In : Animal health research reviews / Conference of Research Workers in Animal Diseases. 15, 2, p. 157-160 4 p.

Research output: Contribution to journalArticle

3 Scopus citations
4 Scopus citations

Stochastic model of porcine reproductive and respiratory syndrome virus control strategies on a swine farm in the United States

Jeong, J., Aly, S. S., Cano, J. P., Polson, D., Kass, P. H. & Perez, A. M., Mar 2014, In : American Journal of Veterinary Research. 75, 3, p. 260-267 8 p.

Research output: Contribution to journalArticle

9 Scopus citations

Survey of Beef Quality Assurance on California dairies

Aly, S. S., Rossow, H. A., Acetoze, G., Lehenbauer, T. W., Payne, M., Meyer, D., Maas, J. & Hoar, B., Mar 2014, In : Journal of Dairy Science. 97, 3, p. 1348-1357 10 p.

Research output: Contribution to journalArticle

4 Scopus citations

Susceptibility loci revealed for bovine respiratory disease complex in pre-weaned holstein calves

Neibergs, H. L., Seabury, C. M., Wojtowicz, A. J., Wang, Z., Scraggs, E., Kiser, J. N., Neupane, M., Womack, J. E., Eenennaam, A. V., Hagevoort, G. R., Lehenbauer, T. W., Aly, S. S., Davis, J. & Taylor, J. F., Dec 22 2014, (Accepted/In press) In : BMC Genomics.

Research output: Contribution to journalArticle

50 Scopus citations
2013
3 Scopus citations
9 Scopus citations
5 Scopus citations

Efficacy of feeding a lacteal-derived colostrum replacer or pooled maternal colostrum with a low IgG concentration for prevention of failure of passive transfer in dairy calves

Pithua, P., Aly, S. S., Haines, D. M., Champagne, J. D., Middleton, J. R. & Poock, S. E., Jul 15 2013, In : Journal of the American Veterinary Medical Association. 243, 2, p. 277-282 6 p.

Research output: Contribution to journalArticle

7 Scopus citations

Randomized noninferiority clinical trial evaluating 3 commercial dry cow mastitis preparations: II. Cow health and performance in early lactation

Arruda, A. G., Godden, S., Rapnicki, P., Gorden, P., Timms, L., Aly, S. S., Lehenbauer, T. W. & Champagne, J., Oct 2013, In : Journal of Dairy Science. 96, 10, p. 6390-6399 10 p.

Research output: Contribution to journalArticle

4 Scopus citations

Randomized noninferiority clinical trial evaluating 3 commercial dry cow mastitis preparations: I. Quarter-level outcomes

Arruda, A. G., Godden, S., Rapnicki, P., Gorden, P., Timms, L., Aly, S. S., Lehenbauer, T. W. & Champagne, J., 2013, In : Journal of Dairy Science. 96, 7, p. 4419-4435 17 p.

Research output: Contribution to journalArticle

28 Scopus citations