Sharif S Aly, PhD; MPVM

Associate Professor

  • 529 Citations
  • 14 h-Index
20052019
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Research Output 2005 2019

  • 529 Citations
  • 14 h-Index
  • 58 Article
  • 1 Review article
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Article
2019

Association between herd management practices and antimicrobial resistance in Salmonella spp. from cull dairy cattle in Central California

Pereira, R., Williams, D. R., Rossitto, P., Adaska, J., Okello, E., Champagne, J., Lehenbauer, T. W., Li, X., Chase, J., Nguyen, T., Pires, A. F. A., Atwill, E. R. & Aly, S. S., Jan 1 2019, In : PeerJ. 2019, 3, e6546.

Research output: Contribution to journalArticle

Open Access
Salmonella
Dairies
Practice Management
antibiotic resistance
dairy cattle
2 Citations (Scopus)

Association of plasma haptoglobin concentration and other biomarkers with bovine respiratory disease status in pre-weaned dairy calves

Moisá, S. J., Aly, S. S., Lehenbauer, T. W., Love, W. J., Rossitto, P. V., Van Eenennaam, A. L., Trombetta, S. C., Bortoluzzi, E. M. & Hulbert, L. E., Jan 1 2019, In : Journal of Veterinary Diagnostic Investigation. 31, 1, p. 40-46 7 p.

Research output: Contribution to journalArticle

Cattle Diseases
bovine respiratory disease
Haptoglobins
dairy calves
haptoglobins
3 Citations (Scopus)

Bovine respiratory disease (BRD) cause-specific and overall mortality in preweaned calves on California dairies: The BRD 10K study

Dubrovsky, S. A., Van Eenennaam, A. L., Karle, B. M., Rossitto, P. V., Lehenbauer, T. W. & Aly, S. S., Jan 1 2019, In : Journal of Dairy Science.

Research output: Contribution to journalArticle

Cattle Diseases
bovine respiratory disease
dairies
calves
Mortality
2 Citations (Scopus)

Development and comparison of loop-mediated isothermal amplification and quantitative polymerase chain reaction assays for the detection of Mycoplasma bovis in milk

Appelt, S., Aly, S. S., Tonooka, K., Glenn, K., Xue, Z., Lehenbauer, T. W. & Marco, M. L., Jan 1 2019, (Accepted/In press) In : Journal of Dairy Science.

Research output: Contribution to journalArticle

Mycoplasma bovis
Milk
quantitative polymerase chain reaction
milk
Polymerase Chain Reaction

Development of a clinical scoring system for bovine respiratory disease in weaned dairy calves

Maier, G., Rowe, J. D., Lehenbauer, T. W., Karle, B. M., Williams, D. R., Champagne, J. D. & Aly, S. S., Jan 1 2019, In : Journal of Dairy Science.

Research output: Contribution to journalArticle

Cattle Diseases
bovine respiratory disease
dairy calves
Respiratory System
diagnostic sensitivity
2 Citations (Scopus)

Effectiveness of zinc supplementation on diarrhea and average daily gain in preweaned dairy calves: A double-blind, blockrandomized, placebo-controlled clinical trial

Feldmann, H. R., Williams, D. R., Champagne, J. D., Lehenbauer, T. W. & Aly, S. S., Jan 1 2019, In : PloS one. 14, 7, e0219321.

Research output: Contribution to journalArticle

Open Access
zinc methionine
dairy calves
Dairies
Controlled Clinical Trials
average daily gain

Environmental sampling to assess the bioburden of Mycobacterium avium subspecies paratuberculosis in drylot pens on California dairies

Chamchoy, T., Williams, D. R., Adaska, J. M., Anderson, R. J. & Aly, S. S., Jan 1 2019, In : PeerJ. 2019, 11, e8081.

Research output: Contribution to journalArticle

Open Access
Mycobacterium avium subsp. paratuberculosis
microbial load
Mycobacterium avium
Dairies
paratuberculosis
4 Citations (Scopus)

Epidemiology of bovine respiratory disease (BRD) in preweaned calves on California dairies: The BRD 10K study

Dubrovsky, S. A., Van Eenennaam, A. L., Karle, B. M., Rossitto, P. V., Lehenbauer, T. W. & Aly, S. S., Jan 1 2019, In : Journal of Dairy Science.

Research output: Contribution to journalArticle

Cattle Diseases
bovine respiratory disease
epidemiology
dairies
Epidemiology

Evaluation of four commercial tests for detecting ceftiofur in waste milk bulk tank samples

Belmar, M., Aly, S., Karle, B. M. & Pereira, R. V., Jan 1 2019, In : PloS one. 14, 11, e0224884.

Research output: Contribution to journalArticle

Open Access
ceftiofur
milk tanks
Milk
Drug Residues
drug residues
4 Citations (Scopus)

Management factors associated with bovine respiratory disease in preweaned calves on California dairies: The BRD 100 study

Maier, G., Love, W. J., Karle, B. M., Dubrovsky, S. A., Williams, D. R., Champagne, J. D., Anderson, R. J., Rowe, J. D., Lehenbauer, T. W., Van Eenennaam, A. L. & Aly, S. S., Jan 1 2019, In : Journal of Dairy Science.

Research output: Contribution to journalArticle

Cattle Diseases
bovine respiratory disease
dairies
calves
Practice Management

Molecular epidemiology of coagulase-negative Staphylococcus species isolated at different lactation stages from dairy cattle in the United States

Jenkins, S. N., Okello, E., Rossitto, P. V., Lehenbauer, T. W., Champagne, J., Penedo, M. C. T., Arruda, A. G., Godden, S., Rapnicki, P., Gorden, P. J., Timms, L. L. & Aly, S. S., Jan 1 2019, In : PeerJ. 2019, 5, e6749.

Research output: Contribution to journalArticle

Open Access
molecular epidemiology
coagulase negative staphylococci
Molecular Epidemiology
Dairies
Coagulase

Preweaning cost of bovine respiratory disease (BRD) and cost-benefit of implementation of preventative measures in calves on California dairies: The BRD 10K study

Dubrovsky, S. A., Van Eenennaam, A. L., Aly, S. S., Karle, B. M., Rossitto, P. V., Overton, M. W., Lehenbauer, T. W. & Fadel, J. G., Jan 1 2019, (Accepted/In press) In : Journal of Dairy Science.

Research output: Contribution to journalArticle

Cattle Diseases
bovine respiratory disease
Cost of Illness
Cost-Benefit Analysis
dairies

Risk factors affecting dairy cattle protective grouping behavior, commonly known as bunching, against Stomoxys calcitrans (L.) on California dairies

El Ashmawy, W. R., Williams, D. R., Gerry, A. C., Champagne, J. D., Lehenbauer, T. W. & Aly, S. S., Jan 1 2019, In : PloS one. 14, 11, e0224987.

Research output: Contribution to journalArticle

Open Access
Muscidae
Stomoxys calcitrans
Dairies
dairy cattle
dairies
2018
2 Citations (Scopus)

A nested compartmental model to assess the efficacy of paratuberculosis control measures on U.S. Dairy farms

Konboon, M., Bani-Yaghoub, M., Pithua, P. O., Rhee, N. & Aly, S. S., Oct 1 2018, In : PLoS One. 13, 10, e0203190.

Research output: Contribution to journalArticle

Paratuberculosis
Mycobacterium avium subsp. paratuberculosis
Dairies
paratuberculosis
dairy farming

Effectiveness of control and preventive measures influenced by pathogen trait evolution: Example of Escherichia coli O157:H7

Bani-Yaghoub, M., Wang, X., Pithua, P. O. & Aly, S. S., Jan 1 2018, (Accepted/In press) In : Journal of Computational and Applied Mathematics.

Research output: Contribution to journalArticle

Decontamination
Pathogens
Escherichia coli
Escherichia Coli
Drugs
1 Citation (Scopus)

Effect of the environment on the risk of respiratory disease in preweaning dairy calves during summer months

Louie, A. P., Rowe, J. D., Love, W. J., Lehenbauer, T. W. & Aly, S. S., Nov 1 2018, In : Journal of Dairy Science. 101, 11, p. 10230-10247 18 p.

Research output: Contribution to journalArticle

Cattle Diseases
bovine respiratory disease
dairy calves
respiratory tract diseases
Humidity
3 Citations (Scopus)

Multidrug residues and antimicrobial resistance patterns in waste milk from dairy farms in Central California

Tempini, P. N., Aly, S. S., Karle, B. M. & Pereira, R. V. V., Jan 1 2018, (Accepted/In press) In : Journal of Dairy Science.

Research output: Contribution to journalArticle

antibiotic resistance
dairy farming
Milk
milk
Drug Residues
4 Citations (Scopus)

Regional management practices and prevalence of bovine respiratory disease in California's preweaned dairy calves

Karle, B. M., Maier, G., Love, W. J., Dubrovsky, S. A., Williams, D. R., Anderson, R. J., Van Eenennaam, A. L., Lehenbauer, T. W. & Aly, S. S., Jan 1 2018, (Accepted/In press) In : Journal of Dairy Science.

Research output: Contribution to journalArticle

Cattle Diseases
bovine respiratory disease
dairy calves
Practice Management
dairies
2017
10 Citations (Scopus)

Agreement Among 4 Sampling Methods to Identify Respiratory Pathogens in Dairy Calves with Acute Bovine Respiratory Disease

Doyle, D., Credille, B., Lehenbauer, T. W., Berghaus, R., Aly, S. S., Champagne, J., Blanchard, P. C., Crossley, B., Berghaus, L., Cochran, S. & Woolums, A., 2017, (Accepted/In press) In : Journal of Veterinary Internal Medicine.

Research output: Contribution to journalArticle

Cattle Diseases
bovine respiratory disease
dairy calves
Nose
Bronchoalveolar Lavage
1 Citation (Scopus)

Cecal infarction in neonatal calves: a retrospective study

Adaska, J. M., Moeller, R. B., Blanchard, P. C. & Aly, S. S., Mar 1 2017, In : Journal of Veterinary Diagnostic Investigation. 29, 2, p. 242-244 3 p.

Research output: Contribution to journalArticle

infarction
retrospective studies
Infarction
Retrospective Studies
lesions (animal)
1 Citation (Scopus)

Whole-genome sequencing and concordance between antimicrobial susceptibility genotypes and phenotypes of bacterial isolates associated with bovine respiratory disease

Owen, J. R., Noyes, N., Young, A. E., Prince, D. J., Blanchard, P. C., Lehenbauer, T. W., Aly, S. S., Davis, J. H., O'Rourke, S. M., Abdo, Z., Belk, K., Miller, M. R., Morley, P. & Van Eenennaam, A. L., Sep 1 2017, In : G3: Genes, Genomes, Genetics. 7, 9, p. 3059-3071 13 p.

Research output: Contribution to journalArticle

Cattle Diseases
Genotype
Genome
Phenotype
Mycoplasma bovis
2016
5 Citations (Scopus)

Epidemiology of Salmonella sp. in California cull dairy cattle: Prevalence of fecal shedding and diagnostic accuracy of pooled enriched broth culture of fecal samples

Abuaboud, O., Adaska, J. M., Williams, D. R., Rossitto, P. V., Champagne, J. D., Lehenbauer, T. W., Atwill, E. R., Li, X. & Aly, S. S., 2016, In : PeerJ. 2016, 8, e2386.

Research output: Contribution to journalArticle

Epidemiology
Salmonella
Dairies
dairy cattle
epidemiology
1 Citation (Scopus)

Investigation of Anaplasma marginale seroprevalence in a traditionally managed large California beef herd

Tucker, T. R., Aly, S. S., Maas, J., Davy, J. S. & Foley, J. E., 2016, In : Veterinary Medicine International. 2016, 6186078.

Research output: Contribution to journalArticle

Anaplasma marginale
Seroepidemiologic Studies
seroprevalence
beef
herds
10 Citations (Scopus)

Prevalence and level of enterohemorrhagic escherichia coli in culled dairy cows at harvest

Stromberg, Z. R., Lewis, G. L., Aly, S. S., Lehenbauer, T. W., Bosilevac, J. M., Cernicchiaro, N. & Moxley, R. A., Mar 1 2016, In : Journal of Food Protection. 79, 3, p. 421-431 11 p.

Research output: Contribution to journalArticle

Enterohemorrhagic Escherichia coli
enterohemorrhagic Escherichia coli
dairy cows
Shiga-Toxigenic Escherichia coli
Escherichia coli O157
11 Citations (Scopus)
Bovine Respiratory Disease Complex
bovine respiratory disease
diagnostic sensitivity
dairy calves
Nose
14 Citations (Scopus)

Survey of management practices related to bovine respiratory disease in preweaned calves on California dairies

Love, W. J., Lehenbauer, T. W., Karle, B. M., Hulbert, L. E., Anderson, R. J., Van Eenennaam, A. L., Farver, T. B. & Aly, S. S., Feb 1 2016, In : Journal of Dairy Science. 99, 2, p. 1483-1494 12 p.

Research output: Contribution to journalArticle

Cattle Diseases
bovine respiratory disease
Practice Management
dairies
calves
2015
13 Citations (Scopus)
dairy heifers
immunoglobulin G
Immunoglobulin G
calves
Mortality
2 Citations (Scopus)
Paratuberculosis
Mycobacterium avium
paratuberculosis
seroconversion
dairy herds
23 Citations (Scopus)

Single pathogen challenge with agents of the bovine respiratory disease complex

Bovine Respiratory Disease Complex Coordinated Agricultural Project Research Team, Nov 1 2015, In : PLoS One. 10, 11, e0142479.

Research output: Contribution to journalArticle

Bovine Respiratory Disease Complex
bovine respiratory disease
Pulmonary diseases
Pathogens
Viruses
2014
5 Citations (Scopus)

Agreement between bovine respiratory disease scoring systems for pre-weaned dairy calves

Aly, S. S., Love, W. J., Williams, D. R., Lehenbauer, T. W., Van Eenennaam, A., Drake, C., Kass, P. H. & Farver, T. B., Dec 28 2014, In : Animal health research reviews / Conference of Research Workers in Animal Diseases. 15, 2, p. 148-150 3 p.

Research output: Contribution to journalArticle

bovine respiratory disease
dairy calves
calves
farms
disease diagnosis
6 Citations (Scopus)
Mycobacterium avium subsp. paratuberculosis
Tuberculin Test
tuberculin
Mycobacterium avium
Tuberculin
18 Citations (Scopus)

Blood calcium dynamics after prophylactic treatment of subclinical hypocalcemia with oral or intravenous calcium

Blanc, C. D., Van der List, M., Aly, S. S., Rossow, H. A. & Silva Del Rio, N., Nov 1 2014, In : Journal of Dairy Science. 97, 11, p. 6901-6906 6 p.

Research output: Contribution to journalArticle

hypocalcemia
Hypocalcemia
mouth
Calcium
calcium
6 Citations (Scopus)

Comparison between low-dose, high-sort and high-dose, low-sort semen on conception and calf sex ratio in Jersey heifers and cows

Lucena, J. A., Kenyon, A. G., Reynolds, J. P., Moreno, J. F., Lenz, R. W., Carroll, D., Lehenbauer, T. W., Champagne, J. D. & Aly, S. S., Mar 2014, In : Journal of Dairy Science. 97, 3, p. 1782-1789 8 p.

Research output: Contribution to journalArticle

Sex Ratio
Jersey
Semen
semen
heifers
16 Citations (Scopus)
Mastitis
cost effectiveness
Mycoplasma bovis
dairy herds
mastitis
36 Citations (Scopus)

Development of a novel clinical scoring systemfor on-farmdiagnosis of bovine respiratory disease in pre-weaned dairy calves

Love, W. J., Lehenbauer, T. W., Kass, P. H., Van Eenennaam, A. L. & Aly, S. S., 2014, In : PeerJ. 2013, 1, 238.

Research output: Contribution to journalArticle

Cattle Diseases
bovine respiratory disease
Pulmonary diseases
dairy calves
Dairies
8 Citations (Scopus)

Effect of three colostrum diets on passive transfer of immunity and preweaning health in calves on a California dairy following colostrum management training

Williams, D. R., Pithua, P., Garcia, A., Champagne, J., Haines, D. M. & Aly, S. S., 2014, In : Veterinary Medicine International. 2014, 698741.

Research output: Contribution to journalArticle

Colostrum
Passive Immunization
colostrum
dairies
immunity
6 Citations (Scopus)
hematoma
Clostridium perfringens
Hematoma
cattle
Gastrointestinal Contents
10 Citations (Scopus)

Reliability of environmental sampling culture results using the negative binomial intraclass correlation coefficient

Aly, S. S., Zhao, J., Li, B. & Jiang, J., 2014, In : SpringerPlus. 3, 1, p. 1-7 7 p.

Research output: Contribution to journalArticle

sampling
slurry
simulation
3 Citations (Scopus)

Results of the BRD CAP project: progress toward identifying genetic markers associated with BRD susceptibility

Van Eenennaam, A., Neibergs, H., Seabury, C., Taylor, J., Wang, Z., Scraggs, E., Schnabel, R. D., Decker, J., Wojtowicz, A., Aly, S. S., Davis, J., Blanchard, P. C., Crossley, B., Rossitto, P., Lehenbauer, T. W., Hagevoort, R., Chavez, E., Neibergs, J. S. & Womack, J. E., Dec 1 2014, In : Animal health research reviews / Conference of Research Workers in Animal Diseases. 15, 2, p. 157-160 4 p.

Research output: Contribution to journalArticle

Cattle Diseases
bovine respiratory disease
Genetic Markers
Genome-Wide Association Study
Single Nucleotide Polymorphism
4 Citations (Scopus)
Paratuberculosis
paratuberculosis
dairy herds
Real-Time Polymerase Chain Reaction
quantitative polymerase chain reaction
9 Citations (Scopus)

Stochastic model of porcine reproductive and respiratory syndrome virus control strategies on a swine farm in the United States

Jeong, J., Aly, S. S., Cano, J. P., Polson, D., Kass, P. H. & Perez, A. M., Mar 2014, In : American Journal of Veterinary Research. 75, 3, p. 260-267 8 p.

Research output: Contribution to journalArticle

Porcine respiratory and reproductive syndrome virus
Mass Vaccination
Porcine reproductive and respiratory syndrome virus
Porcine Reproductive and Respiratory Syndrome
porcine reproductive and respiratory syndrome
4 Citations (Scopus)

Survey of Beef Quality Assurance on California dairies

Aly, S. S., Rossow, H. A., Acetoze, G., Lehenbauer, T. W., Payne, M., Meyer, D., Maas, J. & Hoar, B., Mar 2014, In : Journal of Dairy Science. 97, 3, p. 1348-1357 10 p.

Research output: Contribution to journalArticle

beef quality
quality control
dairies
Quality of Health Care
dairy animals
49 Citations (Scopus)

Susceptibility loci revealed for bovine respiratory disease complex in pre-weaned holstein calves

Neibergs, H. L., Seabury, C. M., Wojtowicz, A. J., Wang, Z., Scraggs, E., Kiser, J. N., Neupane, M., Womack, J. E., Eenennaam, A. V., Hagevoort, G. R., Lehenbauer, T. W., Aly, S. S., Davis, J. & Taylor, J. F., Dec 22 2014, (Accepted/In press) In : BMC Genomics.

Research output: Contribution to journalArticle

Bovine Respiratory Disease Complex
Single Nucleotide Polymorphism
Disease Susceptibility
Population
Genome-Wide Association Study
2013
2 Citations (Scopus)
immunoglobulin G
blood serum
cohort studies
Cohort Studies
Holstein
8 Citations (Scopus)
randomized clinical trials
Zinc Oxide
Zinc
Diarrhea
diarrhea
5 Citations (Scopus)
Colostrum
colostrum
morbidity
heifers
Milk
7 Citations (Scopus)

Efficacy of feeding a lacteal-derived colostrum replacer or pooled maternal colostrum with a low IgG concentration for prevention of failure of passive transfer in dairy calves

Pithua, P., Aly, S. S., Haines, D. M., Champagne, J. D., Middleton, J. R. & Poock, S. E., Jul 15 2013, In : Journal of the American Veterinary Medical Association. 243, 2, p. 277-282 6 p.

Research output: Contribution to journalArticle

Colostrum
dairy calves
colostrum
Milk
Immunoglobulin G
4 Citations (Scopus)

Randomized noninferiority clinical trial evaluating 3 commercial dry cow mastitis preparations: II. Cow health and performance in early lactation

Arruda, A. G., Godden, S., Rapnicki, P., Gorden, P., Timms, L., Aly, S. S., Lehenbauer, T. W. & Champagne, J., Oct 2013, In : Journal of Dairy Science. 96, 10, p. 6390-6399 10 p.

Research output: Contribution to journalArticle

randomized clinical trials
Mastitis
early lactation
Lactation
mastitis
27 Citations (Scopus)

Randomized noninferiority clinical trial evaluating 3 commercial dry cow mastitis preparations: I. Quarter-level outcomes

Arruda, A. G., Godden, S., Rapnicki, P., Gorden, P., Timms, L., Aly, S. S., Lehenbauer, T. W. & Champagne, J., 2013, In : Journal of Dairy Science. 96, 7, p. 4419-4435 17 p.

Research output: Contribution to journalArticle

randomized clinical trials
Mastitis
mastitis
Milk
Randomized Controlled Trials
11 Citations (Scopus)

Synergistic effects of lactic acid and sodium dodecyl sulfate to decontaminate Escherichia coli o157: h7 on cattle hide sections

Elramady, M. G., Aly, S. S., Rossitto, P. V., Crook, J. A. & Cullor, J. S., Jul 1 2013, In : Foodborne Pathogens and Disease. 10, 7, p. 661-663 3 p.

Research output: Contribution to journalArticle

Escherichia coli O157
sodium dodecyl sulfate
Sodium Dodecyl Sulfate
lactic acid
Lactic Acid