• 7640 Citations
  • 45 h-Index
1975 …2019
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Research Output 1975 2019

2019
1 Citation (Scopus)
Diabetic Foot
Randomized Controlled Trials
Standard of Care
Equipment and Supplies
Wounds and Injuries
2 Citations (Scopus)

Comparison of protein expression levels and proteomically-inferred genotypes using human hair from different body sites

Milan, J. A., Wu, P. W., Salemi, M. R., Durbin-Johnson, B. P., Rocke, D. M., Phinney, B. S., Rice, R. H. & Parker, G. J., Jul 1 2019, In : Forensic Science International: Genetics. 41, p. 19-23 5 p.

Research output: Contribution to journalArticle

Hair
Genotype
Peptides
Proteins
Proteomics
2 Citations (Scopus)

Proteomic manifestations of genetic defects in autosomal recessive congenital ichthyosis

Karim, N., Durbin-Johnson, B., Rocke, D. M., Salemi, M., Phinney, B. S., Naeem, M. & Rice, R. H., Jun 15 2019, In : Journal of Proteomics. 201, p. 104-109 6 p.

Research output: Contribution to journalArticle

Ichthyosis
Proteomics
Epidermis
Defects
Genes
2 Citations (Scopus)

Sex estimation using sexually dimorphic amelogenin protein fragments in human enamel

Parker, G. J., Yip, J. M., Eerkens, J. W., Salemi, M., Durbin-Johnson, B., Kiesow, C., Haas, R., Buikstra, J. E., Klaus, H., Regan, L. A., Rocke, D. M. & Phinney, B. S., Jan 1 2019, In : Journal of Archaeological Science. 101, p. 169-180 12 p.

Research output: Contribution to journalArticle

Protein
Enamel
Teeth
logistics
regression

Speeding up Percolator

Halloran, J. T., Zhang, H., Kara, K., Renggli, C., The, M., Zhang, C., Rocke, D. M., Käll, L. & Noble, W. S., Sep 6 2019, In : Journal of Proteome Research. 18, 9, p. 3353-3359 7 p.

Research output: Contribution to journalArticle

Peptides
Tandem Mass Spectrometry
Calibration
Mass spectrometry
Learning systems
2018
1 Citation (Scopus)

A Matter of Time: Faster Percolator Analysis via Efficient SVM Learning for Large-Scale Proteomics

Halloran, J. T. & Rocke, D. M., May 4 2018, In : Journal of Proteome Research. 17, 5, p. 1978-1982 5 p.

Research output: Contribution to journalArticle

Proteomics
Support vector machines
Learning systems
Licensure
Support Vector Machine
4 Citations (Scopus)

Corneocyte proteomics: Applications to skin biology and dermatology

Rice, R. H., Durbin-Johnson, B. P., Mann, S. M., Salemi, M., Urayama, S., Rocke, D. M., Phinney, B. S. & Sundberg, J. P., Aug 1 2018, In : Experimental Dermatology. 27, 8, p. 931-938 8 p.

Research output: Contribution to journalReview article

Dermatology
Proteomics
Skin
Nails
Proteins

Erratum: Urine complement proteins and the risk of kidney disease progression and mortality in type 2 diabetes (Diabetes Care (2018) 41 (2361-2369) DOI: 10.2337/dc18-0699)

Vaisar, T., Durbin-Johnson, B., Whitlock, K., Babenko, I., Mehrotra, R., Rocke, D. M. & Afkarian, M., Nov 1 2018, In : Diabetes Care. 42, 6, 1 p.

Research output: Contribution to journalComment/debate

Open Access
Glycosylphosphatidylinositols
Kidney Diseases
Type 2 Diabetes Mellitus
Disease Progression
Complement System Proteins
1 Citation (Scopus)

Learning concave conditional likelihood models for improved analysis of tandem mass spectra

Halloran, J. T. & Rocke, D. M., Jan 1 2018, In : Advances in Neural Information Processing Systems. 2018-December, p. 5420-5430 11 p.

Research output: Contribution to journalConference article

Maximum likelihood estimation
Bayesian networks
Peptides
Proteins
Message passing

The Beta 2 Adrenergic Receptor Antagonist Timolol Improves Healing of Combined Burn and Radiation Wounds

Albrecht, H., Yang, H. Y., Kiuru, M. H., Maksaereekul, S., Durbin-Johnson, B., Wong, M. S., Stevenson, T. R., Rocke, D. M. & Isseroff, R. R., Apr 1 2018, In : Radiation Research. 189, 4, p. 441-445 5 p.

Research output: Contribution to journalArticle

Adrenergic beta-2 Receptor Antagonists
adrenergics
Timolol
epinephrine
healing

Urine Complement Proteins and the Risk of Kidney Disease Progression and Mortality in Type 2 Diabetes

Vaisar, T., Durbin-Johnson, B., Whitlock, K., Babenko, I., Mehrotra, R., Rocke, D. M. & Afkarian, M., Nov 1 2018, In : Diabetes Care. 41, 11, p. 2361-2369 9 p.

Research output: Contribution to journalArticle

Kidney Diseases
Type 2 Diabetes Mellitus
Disease Progression
Complement System Proteins
Chronic Kidney Failure
2017
5 Citations (Scopus)

Glucose-lowering effect of whey protein depends upon clinical characteristics of patients with type 2 diabetes

Almario, R. U., Buchan, W. M., Rocke, D. M. & Karakas, S. E., Jul 1 2017, In : BMJ Open Diabetes Research and Care. 5, 1, e000420.

Research output: Contribution to journalArticle

Type 2 Diabetes Mellitus
Glucose
Glucagon-Like Peptide 1
Placebos
Triglycerides
3 Citations (Scopus)

Gradients of generative models for improved discriminative analysis of tandem mass spectra

Halloran, J. T. & Rocke, D. M., Jan 1 2017, In : Advances in Neural Information Processing Systems. 2017-December, p. 5725-5734 10 p.

Research output: Contribution to journalConference article

Bayesian networks
Proteins
Peptides
Mass spectrometry
Identification (control systems)
1 Citation (Scopus)

Joint-specific risk of impaired function in fibrodysplasia ossificans progressiva (FOP)

Pignolo, R. J., Durbin-Johnson, B. P., Rocke, D. M. & Kaplan, F. S., 2017, (Accepted/In press) In : Bone.

Research output: Contribution to journalArticle

Myositis Ossificans
Joints
Heterotopic Ossification
Elbow
Jaw
1 Citation (Scopus)

Prevalence and risk factors for kidney stones in fibrodysplasia ossificans progressiva

Gupta, R. R., Delai, P. L. R., Glaser, D. L., Rocke, D. M., Al Mukaddam, M., Pignolo, R. J. & Kaplan, F. S., Jan 1 2017, (Accepted/In press) In : Bone.

Research output: Contribution to journalArticle

Myositis Ossificans
Kidney Calculi
Population
Activin Receptors
Nephrolithiasis
8 Citations (Scopus)

Proteomic analysis of hair shafts from monozygotic twins: Expression profiles and genetically variant peptides

Wu, P. W., Mason, K. E., Durbin-Johnson, B. P., Salemi, M., Phinney, B. S., Rocke, D. M., Parker, G. J. & Rice, R. H., Jul 1 2017, In : Proteomics. 17, 13-14, 1600462.

Research output: Contribution to journalArticle

Monozygotic Twins
Proteomics
Hair
Peptides
Proteins
8 Citations (Scopus)

Proteomic profiling of Pachyonychia congenita plantar callus

Rice, R. H., Durbin-Johnson, B. P., Salemi, M., Schwartz, M. E., Rocke, D. M. & Phinney, B. S., Aug 8 2017, In : Journal of Proteomics. 165, p. 132-137 6 p.

Research output: Contribution to journalArticle

Pachyonychia Congenita
Bony Callus
Proteomics
Mutation
Proteins
2016
2 Citations (Scopus)

Best Practices for Biostatistical Consultation and Collaboration in Academic Health Centers

Biostatistics, Epidemiology, and Research Design (BERD) Key Function Committee of the Clinical and Translational Science (CTSA) Consortium, Apr 2 2016, In : American Statistician. 70, 2, p. 187-194 8 p.

Research output: Contribution to journalArticle

Biostatistics
Best Practice
Health
Unit
Leadership
35 Citations (Scopus)

Demonstration of protein-based human identification using the hair shaft proteome

Parker, G. J., Leppert, T., Anex, D. S., Hilmer, J. K., Matsunami, N., Baird, L., Stevens, J., Parsawar, K., Durbin-Johnson, B. P., Rocke, D. M., Nelson, C., Fairbanks, D. J., Wilson, A. S., Rice, R. H., Woodward, S. R., Bothner, B., Hart, B. R. & Leppert, M., Sep 1 2016, In : PLoS One. 11, 9, e0160653.

Research output: Contribution to journalArticle

Forensic Anthropology
Proteome
proteome
Polymorphism
Hair
10 Citations (Scopus)

Myasthenia gravis exacerbation after discontinuing mycophenolate

Oskarsson, B. E., Rocke, D. M., Dengel, K. & Richman, D. P., Mar 22 2016, In : Neurology. 86, 12, p. 1159-1163 5 p.

Research output: Contribution to journalArticle

Mycophenolic Acid
Myasthenia Gravis
Therapeutics
Immunosuppressive Agents
Cohort Studies
8 Citations (Scopus)

Proteomic analysis of loricrin knockout mouse epidermis

Rice, R. H., Durbin-Johnson, B. P., Ishitsuka, Y., Salemi, M., Phinney, B. S., Rocke, D. M. & Roop, D. R., Aug 5 2016, In : Journal of Proteome Research. 15, 8, p. 2560-2566 7 p.

Research output: Contribution to journalArticle

Epidermis
Knockout Mice
Proteomics
Proteins
Ichthyosis
55 Citations (Scopus)

The Natural History of Flare-Ups in Fibrodysplasia Ossificans Progressiva (FOP): A Comprehensive Global Assessment

Pignolo, R. J., Bedford-Gay, C., Liljesthröm, M., Durbin-Johnson, B. P., Shore, E. M., Rocke, D. M. & Kaplan, F. S., Mar 1 2016, In : Journal of Bone and Mineral Research. 31, 3, p. 650-656 7 p.

Research output: Contribution to journalArticle

Myositis Ossificans
Natural History
Glucocorticoids
Heterotopic Ossification
Intramuscular Injections
2015
8 Citations (Scopus)
Alzheimer Disease
Pathology
Genes
Brain
Protein Interaction Maps
11 Citations (Scopus)

Pharmacokinetic and pharmacodynamic analysis comparing diverse effects of detomidine, medetomidine, and dexmedetomidine in the horse: A population analysis

Grimsrud, K. N., Ait-Oudhia, S., Durbin-Johnson, B. P., Rocke, D. M., Mama, K. R., Rezende, M. L., Stanley, S. D. & Jusko, W. J., Feb 1 2015, In : Journal of Veterinary Pharmacology and Therapeutics. 38, 1, p. 24-34 11 p.

Research output: Contribution to journalArticle

Medetomidine
dexmedetomidine
Dexmedetomidine
detomidine
medetomidine
21 Citations (Scopus)

The serum immunoglobulin G glycosylation signature of gastric cancer

Ruhaak, L. R., Barkauskas, D. A., Torres, J., Cooke, C. L., Wu, L. D., Stroble, C., Ozcan, S., Williams, C. C., Camorlinga, M., Rocke, D. M., Lebrilla, C. B. & Solnick, J. V., Mar 1 2015, In : EuPA Open Proteomics. 6, p. 1-9 9 p.

Research output: Contribution to journalArticle

Glycosylation
Stomach Neoplasms
Immunoglobulin G
Gastritis
Duodenal Ulcer
2 Citations (Scopus)
Microsimulation
Logit
Variance Components
Nested Models
Logit Model
2014
24 Citations (Scopus)

Human hair shaft proteomic profiling: Individual differences, site specificity and cuticle analysis

Laatsch, C. N., Durbin-Johnson, B. P., Rocke, D. M., Mukwana, S., Newland, A. B., Flagler, M. J., Davis, M. G., Eigenheer, R. A., Phinney, B. S. & Rice, R. H., 2014, In : PeerJ. 2014, 1, e506.

Research output: Contribution to journalArticle

Keratins
Individuality
Proteomics
proteomics
Hair
33 Citations (Scopus)

Serum glycan signatures of gastric cancer

Ozcan, S., Barkauskas, D. A., Ruhaak, L. R., Torres, J., Cooke, C. L., An, H. J., Hua, S., Williams, C. C., Dimapasoc, L. M., Kim, J. H., Camorlinga-Ponce, M., Rocke, D. M., Lebrilla, C. B. & Solnick, J. V., Feb 2014, In : Cancer Prevention Research. 7, 2, p. 226-235 10 p.

Research output: Contribution to journalArticle

Stomach Neoplasms
Polysaccharides
Serum
Duodenal Ulcer
Gastritis
8 Citations (Scopus)

Targeted therapy with MXD3 siRNA, anti-CD22 antibody and nanoparticles for precursor B-cell acute lymphoblastic leukaemia

Satake, N., Duong, C., Chen, C., Barisone, G., Diaz, E. D., Tuscano, J., Rocke, D. M., Nolta, J. & Nitin, N., Nov 1 2014, In : British Journal of Haematology. 167, 4, p. 487-499 13 p.

Research output: Contribution to journalArticle

Precursor B-Cell Lymphoblastic Leukemia-Lymphoma
Precursor Cell Lymphoblastic Leukemia-Lymphoma
Nanoparticles
Small Interfering RNA
Anti-Idiotypic Antibodies
23 Citations (Scopus)

Transcriptome and metabolome analysis of Citrus fruit to elucidate puffing disorder

Ibáñez, A. M., Martinelli, F., Reagan, R. L., Uratsu, S. L., Vo, A., Tinoco, M. A., Phu, M. L., Chen, Y., Rocke, D. M. & Dandekar, A. M., 2014, In : Plant Science. 217-218, p. 87-98 12 p.

Research output: Contribution to journalArticle

puffing
Metabolome
Citrus
citrus fruits
metabolomics
2013
21 Citations (Scopus)

Carbon turnover in the water-soluble protein of the adult human lens

Stewart, D. N., Lango, J., Nambiar, K. P., Falso, M. J. S., FitzGerald, P. G., Rocke, D. M., Hammock, B. D. & Buchholz, B. A., Feb 25 2013, In : Molecular Vision. 19, p. 463-475 13 p.

Research output: Contribution to journalArticle

Lenses
Carbon
Water
Proteins
Bombs
17 Citations (Scopus)

Chicken corneocyte cross-linked proteome

Rice, R. H., Winters, B. R., Durbin-Johnson, B. P. & Rocke, D. M., Feb 1 2013, In : Journal of Proteome Research. 12, 2, p. 771-776 6 p.

Research output: Contribution to journalArticle

Proteome
Chickens
Beak
Hoof and Claw
Feathers
21 Citations (Scopus)

Distinguishing Ichthyoses by Protein Profiling

Rice, R. H., Bradshaw, K. M., Durbin-Johnson, B. P., Rocke, D. M., Eigenheer, R. A., Phinney, B. S., Schmuth, M. & Gruber, R., Oct 9 2013, In : PLoS One. 8, 10, e75355.

Research output: Contribution to journalArticle

Ichthyosis Vulgaris
X-Linked Ichthyosis
Ichthyosis
Lamellar Ichthyosis
Steryl-Sulfatase
70 Citations (Scopus)

Stability of miRNA in human urine supports its biomarker potential

Mall, C., Rocke, D. M., Durbin-Johnson, B. & Weiss, R. H., Aug 2013, In : Biomarkers in Medicine. 7, 4, p. 623-631 9 p.

Research output: Contribution to journalArticle

Biomarkers
MicroRNAs
Urine
Urologic Diseases
Temperature
2012
14 Citations (Scopus)

Comparison of low and high dose ionising radiation using topological analysis of gene coexpression networks

Ray, M., Yunis, R., Chen, X. & Rocke, D. M., May 17 2012, In : BMC Genomics. 13, 1, 190.

Research output: Contribution to journalArticle

Gene Regulatory Networks
Ionizing Radiation
Systems Biology
Radiation
Genes
15 Citations (Scopus)

Differentiating Inbred Mouse Strains from Each Other and Those with Single Gene Mutations Using Hair Proteomics

Rice, R. H., Bradshaw, K. M., Durbin-Johnson, B. P., Rocke, D. M., Eigenheer, R. A., Phinney, B. S. & Sundberg, J. P., Dec 14 2012, In : PLoS One. 7, 12, e51956.

Research output: Contribution to journalArticle

Inbred Strains Mice
Proteomics
proteomics
Hair
hairs
11 Citations (Scopus)

Genomic characterization of a three-dimensional skin model following exposure to ionizing radiation

Yunis, R., Albrecht, H., Kalanetra, K. M., Wu, S. & Rocke, D. M., Nov 2012, In : Journal of Radiation Research. 53, 6, p. 860-875 16 p.

Research output: Contribution to journalArticle

Ionizing Radiation
ionizing radiation
promotion
genes
Skin
19 Citations (Scopus)

Neurological symptoms in individuals with fibrodysplasia ossificans progressiva

Kitterman, J. A., Strober, J. B., Kan, L., Rocke, D. M., Cali, A., Peeper, J., Snow, J., Delai, P. L. R., Morhart, R., Pignolo, R. J., Shore, E. M. & Kaplan, F. S., Dec 2012, In : Journal of Neurology. 259, 12, p. 2636-2643 8 p.

Research output: Contribution to journalArticle

Myositis Ossificans
Neuralgia
Headache
Type I Bone Morphogenetic Protein Receptors
Population
17 Citations (Scopus)

Transcriptional response of Ex vivo human skin to ionizing radiation: Comparison between low- and high-dose effects

Albrecht, H., Durbin-Johnson, B., Yunis, R., Kalanetra, K. M., Wu, S., Chen, R., Stevenson, T. R. & Rocke, D. M., Jan 2012, In : Radiation Research. 177, 1, p. 69-83 15 p.

Research output: Contribution to journalArticle

Ionizing Radiation
ionizing radiation
genes
dosage
Skin
74 Citations (Scopus)

Transcriptomic analysis of toxoplasma development reveals many novel functions and structures specific to sporozoites and oocysts

Fritz, H., Buchholz, K. R., Chen, X., Durbin-Johnson, B., Rocke, D. M., Conrad, P. A. & Boothroyd, J. C., Feb 13 2012, In : PLoS One. 7, 2, e29998.

Research output: Contribution to journalArticle

Sporozoites
Toxoplasma
Oocysts
sporozoites
transcriptomics
2011
26 Citations (Scopus)

Expression of CD44s and CD44v6 in lung cancer and their correlation with prognostic factors

Afify, A. M., Tate, S., Durbin-Johnson, B., Rocke, D. M. & Konia, T., Jan 2011, In : International Journal of Biological Markers. 26, 1, p. 50-57 8 p.

Research output: Contribution to journalArticle

Lung Neoplasms
Tumors
Adenocarcinoma
Small Cell Lung Carcinoma
Carcinoid Tumor
44 Citations (Scopus)

Identification of tissue cyst wall components by transcriptome analysis of in vivo and in vitro Toxoplasma gondii bradyzoites

Buchholz, K. R., Fritz, H., Chen, X., Durbin-Johnson, B., Rocke, D. M., Ferguson, D. J., Conrad, P. A. & Boothroyd, J. C., Dec 2011, In : Eukaryotic Cell. 10, 12, p. 1637-1647 11 p.

Research output: Contribution to journalArticle

Toxoplasma
Gene Expression Profiling
Cysts
Protein Sorting Signals
Transcriptome
21 Citations (Scopus)
Coronary Artery Bypass
Patient Selection
Hospital Mortality
Transplants
Mortality
2010
16 Citations (Scopus)

A general-purpose baseline estimation algorithm for spectroscopic data

Barkauskas, D. A. & Rocke, D. M., Jan 11 2010, In : Analytica Chimica Acta. 657, 2, p. 191-197 7 p.

Research output: Contribution to journalArticle

Mass spectrometry
Mass Spectrometry
proteomics
mass spectrometry
Technology
65 Citations (Scopus)

Early mortality and cardiorespiratory failure in patients with fibrodysplasia ossificans progressiva

Kaplan, F. S., Zasloff, M. A., Kitterman, J. A., Shore, E. M., Hong, C. C. & Rocke, D. M., Mar 1 2010, In : Journal of Bone and Joint Surgery - Series A. 92, 3, p. 686-691 6 p.

Research output: Contribution to journalArticle

Myositis Ossificans
Mortality
Cause of Death
Registries
Thorax
21 Citations (Scopus)

Neonatal salivary analysis reveals global developmental gene expression changes in the premature infant

Maron, J. L., Johnson, K. L., Rocke, D. M., Cohen, M. G., Liley, A. J. & Bianchi, D. W., Mar 1 2010, In : Clinical Chemistry. 56, 3, p. 409-416 8 p.

Research output: Contribution to journalArticle

Developmental Genes
Gene expression
Premature Infants
Genes
Gene Expression
2009
9 Citations (Scopus)

Analysis of MALDI FT-ICR mass spectrometry data: A time series approach

Barkauskas, D. A., Kronewitter, S. R., Lebrilla, C. B. & Rocke, D. M., Aug 26 2009, In : Analytica Chimica Acta. 648, 2, p. 207-214 8 p.

Research output: Contribution to journalArticle

Cyclotron resonance
Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry
Ionization
Mass spectrometry
Noise
46 Citations (Scopus)

Bridging the gap between systems biology and medicine

Clermont, G., Auffray, C., Moreau, Y., Rocke, D. M., Dalevi, D., Dubhashi, D., Marshall, D. R., Raasch, P., Dehne, F., Provero, P., Tegner, J., Aronow, B. J., Langston, M. A. & Benson, M., Sep 29 2009, In : Genome Medicine. 1, 9, gm88.

Research output: Contribution to journalArticle

Systems Biology
Systems Analysis
Research
63 Citations (Scopus)
Intensity-Modulated Radiotherapy
Gastrostomy
Head and Neck Neoplasms
Deglutition Disorders
Drug Therapy
32 Citations (Scopus)

Detecting glycan cancer biomarkers in serum samples using MALDI FT-ICR mass spectrometry data

Barkauskas, D. A., An, H. J., Kronewitter, S. R., De Leoz, M. L., Chew, H. K., deVere White, R. W., Leiserowitz, G. S., Miyamoto, S., Lebrilla, C. B. & Rocke, D. M., Jan 2009, In : Bioinformatics. 25, 2, p. 251-257 7 p.

Research output: Contribution to journalArticle

Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry
Biomarkers
Mass Spectrometry
Tumor Biomarkers
Mass spectrometry