Medical Microbiology and Immunology

Research Output 1953 2019

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Chapter
2018

From short reads to chromosome-scale genome assemblies

Fletcher, K. & Michelmore, R. W., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 151-197 47 p. (Methods in Molecular Biology; vol. 1848).

Research output: Chapter in Book/Report/Conference proceedingChapter

Oomycetes
Workflow
Software
Chromosomes
Genome
2017

The immune system in IBD: Antimicrobial peptides

Bevins, C. L., Mar 1 2017, Crohn's Disease and Ulcerative Colitis: From Epidemiology and Immunobiology to a Rational Diagnostic and Therapeutic Approach: Second Edition. Springer International Publishing, p. 75-86 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Immune System
Peptides
6 Citations (Scopus)

Type IV effector secretion and subversion of host functions by bartonella and brucella species

Dehio, C. & Tsolis, R. M., Jan 1 2017, Current Topics in Microbiology and Immunology. Springer-Verlag, p. 269-295 27 p. (Current Topics in Microbiology and Immunology; vol. 413).

Research output: Chapter in Book/Report/Conference proceedingChapter

Bartonella
Brucella
Arthropod Vectors
Proteobacteria
Infectious Disease Transmission
2016

Mouse models for FXTAS and the fragile X premutation

Foote, M. M., Careaga, M., Buijsen, R. A. M., Berman, R. F., Willemsen, R. & Hukema, R. K., Jan 1 2016, FXTAS, FXPOI, and Other Premutation Disorders. Springer International Publishing, p. 161-179 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Genes
Inborn Genetic Diseases
Diptera
Animals
Biological Phenomena
2015
1 Citation (Scopus)

Immunology of autism

Rose, D. R. & Ashwood, P., Jan 1 2015, The Molecular Basis of Autism. Springer New York, p. 93-115 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Autistic Disorder
Allergy and Immunology
Brain
Autism Spectrum Disorder
Nonverbal Communication
2014
1 Citation (Scopus)

Antipathogen effector molecules: Current and future strategies

Riehle, M. A. & Luckhart, S., Oct 29 2014, Transgenic Insects: Techniques and Applications. CABI International, p. 168-187 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecules
1 Citation (Scopus)

Epigenetic epidemiology of autism and other neurodevelopmental disorders

Woods, R. & LaSalle, J. M., Nov 1 2014, Epigenetic Epidemiology. Springer Netherlands, Vol. 9789400724952. p. 321-342 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Autistic Disorder
Epigenomics
Epidemiology
Inborn Genetic Diseases
Social Behavior

Quartet partitioning reveals hybrid origins of the vertebrate

Syvanen, M., Ericksen, B., Linz, S. & Ducore, J. M., Jan 1 2014, Evolutionary Biology: Genome Evolution, Speciation, Coevolution and Origin of Life. Springer International Publishing, p. 191-205 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Vertebrates
vertebrates
jellies
Sea Urchins
fruit flies

Recurrent CNVs in the etiology of epigenetic neurodevelopmental disorders

LaSalle, J. M. & Islam, M. S., Jan 1 2014, Epigenetics and Complex Traits. Springer New York, p. 147-178 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Chromosomes
Epigenomics
Genes
Genomic Imprinting
DNA Methylation

The potential brain drain from environmental exposures on the methylome and genome across generations

LaSalle, J. M. & Dunaway, K. W., Jan 1 2014, Frontiers in Autism Research: New Horizons for Diagnosis and Treatment. World Scientific Publishing Co., p. 375-406 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Environmental Exposure
DNA Methylation
Genes
Genome
DNA sequences
2013
2 Citations (Scopus)

Coccidioidomycosis

Long, M. T., Pappagianis, D. & Higgins, J., Oct 2013, Equine Infectious Diseases: Second Edition. Elsevier Inc.

Research output: Chapter in Book/Report/Conference proceedingChapter

coccidioidomycosis
Coccidioidomycosis

Imprinting in the CNS and Neurodevelopmental Disorders

Powell, W. T. & LaSalle, J. M., 2013, Epigenetic Regulation in the Nervous System. Elsevier Inc., p. 267-279 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Neurodevelopmental Disorders
Imprinting (Psychology)

MeCP2 and Autism Spectrum Disorders

Adams, S. & LaSalle, J. M., 2013, The Neuroscience of Autism Spectrum Disorders. Elsevier Inc., p. 421-436 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Autism Spectrum Disorder
2 Citations (Scopus)

Modeling host-vector-pathogen immuno-inflammatory interactions in malaria

Vodovotz, Y., Azhar, N., Miskov-Zivanov, N., Buliga, M., Zamora, R., Ermentrout, B., Constantine, G. M., Faeder, J. R., Pakpour, N. & Luckhart, S., May 1 2013, Complex Systems and Computational Biology Approaches to Acute Inflammation. Springer New York, p. 265-279 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pathogens
Culicidae
malaria
Malaria
Blood
3 Citations (Scopus)

The ecology of soil-borne human pathogens

Bultman, M. W., Fisher, F. S. & Pappagianis, D., Jan 1 2013, Essentials of Medical Geology: Revised Edition. Springer Netherlands, p. 477-504 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

pathogen
ecology
tectonic plate
soil
ice cap
1 Citation (Scopus)

Typhoid

Nuccio, S. P., Wangdi, T., Winter, S. E. & Baumler, A. J., Nov 1 2013, The Prokaryotes: Human Microbiology. Springer-Verlag Berlin Heidelberg, p. 375-399 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Typhoid Fever
Salmonella
Paratyphoid Fever
Typhoid-Paratyphoid Vaccines
Gastroenteritis
2012
1 Citation (Scopus)

Antimicrobial peptides in inflammatory bowel disease

Bevins, C. L., Jan 1 2012, Crohn's Disease and Ulcerative Colitis: From Epidemiology and Immunobiology to a Rational Diagnostic and Therapeutic Approach. Springer US, p. 119-132 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Inflammatory Bowel Diseases
Paneth Cells
Peptides
Defensins
Intestines
28 Citations (Scopus)

Autism spectrum disorders: From immunity to behavior

Careaga, M. & Ashwood, P., 2012, Methods in Molecular Biology. Vol. 934. p. 219-240 22 p. (Methods in Molecular Biology; vol. 934).

Research output: Chapter in Book/Report/Conference proceedingChapter

Immunity
Immune System
Autism Spectrum Disorder
Chemokines
Nervous System

T cell responses during human immunodeficiency virus (hiv)-1 infection

Chougnet, C. A. & Shacklett, B., Oct 1 2012, Control of Innate and Adaptive Immune Responses during Infectious Diseases. Springer New York, Vol. 9781461404842. p. 141-169 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Virus Diseases
HIV-1
HIV
T-Lymphocytes
Simian Immunodeficiency Virus
2011
2 Citations (Scopus)

Environmental Shotgun Sequencing: Its Potential and Challenges for Studying the Hidden World of Microbes

Eisen, J. A., May 3 2011, Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches. John Wiley and Sons, p. 157-162 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Firearms

Towards Automated Phylogenomic Inference

Wu, M. & Eisen, J. A., May 3 2011, Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches. John Wiley and Sons, p. 205-215 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2010

Autism, Peripheral Immunity, and Polybrominated Diphenyl Ethers

Goines, P., Ashwood, P. & Van de Water, J. A., Nov 15 2010, Developmental Neurotoxicology Research: Principles, Models, Techniques, Strategies, and Mechanisms. John Wiley and Sons, p. 521-542 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Halogenated Diphenyl Ethers
Autistic Disorder
Immunity
3 Citations (Scopus)

Epigenetic dysregulation of 15q11-13 GABAA receptor genes in autism

Hogart, A. & LaSalle, J. M., 2010, The Neurochemical Basis of Autism: From Molecules to Minicolumns. Springer US, p. 113-127 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

GABA-A Receptors
Autistic Disorder
Epigenomics
Chromosomes, Human, Pair 13
Genes
31 Citations (Scopus)

Large scale immune profiling of infected humans and goats reveals differential recognition of Brucella melitensis antigens

Liang, L., Leng, D., Burk, C., Nakajima-Sasaki, R., Kayala, M. A., Atluri, V. L., Pablo, J., Unal, B., Ficht, T. A., Gotuzzo, E., Saito, M., Morrow, W. J. W., Liang, X., Baldi, P., Gilman, R. H., Vinetz, J. M., Tsolis, R. M. & Felgner, P. L., May 2010, PLoS Neglected Tropical Diseases. 5 ed. Vol. 4. e673

Research output: Chapter in Book/Report/Conference proceedingChapter

Brucella melitensis
Goats
Antigens
Brucellosis
Protein Array Analysis

Neurodevelopmental Toxicology and Autism Spectrum Disorders

Berman, R. F., Koenig, C. M., Hunsaker, M. R., Pessah, I. N. & LaSalle, J. M., Nov 15 2010, Developmental Neurotoxicology Research: Principles, Models, Techniques, Strategies, and Mechanisms. John Wiley and Sons, p. 439-476 38 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Toxicology
Autism Spectrum Disorder
2009
2 Citations (Scopus)

Autism, gastrointestinal disturbance, and immune dysfunction: What is the link?

Ashwood, P., Enstrom, A. & Van de Water, J. A., Jan 1 2009, Autism: Oxidative Stress, Inflammation, and Immune Abnormalities. CRC Press, p. 277-298 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Autistic Disorder
Behavioral Symptoms
Autoimmunity
Gastrointestinal Tract
Autism Spectrum Disorder
21 Citations (Scopus)

Isolating mucosal lymphocytes from biopsy tissue for cellular immunology assays

Shacklett, B., Critchfield, J. W. & Lemongello, D., 2009, Methods in Molecular Biology. Vol. 485. p. 347-356 10 p. (Methods in Molecular Biology; vol. 485).

Research output: Chapter in Book/Report/Conference proceedingChapter

Allergy and Immunology
Lymphocytes
Biopsy
T-Lymphocytes
Sigmoidoscopy
4 Citations (Scopus)

Quantifying HIV-1-specific CD8+ T-cell responses using ELISPOT and cytokine flow cytometry

Shacklett, B., Critchfield, J. W. & Lemongello, D., 2009, Methods in Molecular Biology. Vol. 485. p. 359-374 16 p. (Methods in Molecular Biology; vol. 485).

Research output: Chapter in Book/Report/Conference proceedingChapter

Enzyme-Linked Immunospot Assay
HIV-1
Flow Cytometry
Cytokines
T-Lymphocytes
2008
2 Citations (Scopus)

Bloodfeeding as an Interface of Mammalian and Arthropod Immunity

Akman-Anderson, L., Vodovotz, Y., Zamora, R. & Luckhart, S., 2008, Insect Immunology. Elsevier Inc., p. 151-179 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Arthropods
malaria
Malaria
arthropods
Immunity
5 Citations (Scopus)

Bremia lactucae and Lettuce Downy Mildew

Michelmore, R. W., Ochoa, O. & Wong, J., Nov 10 2008, Oomycete Genetics and Genomics: Diversity, Interactions, and Research Tools. John Wiley & Sons, Inc., p. 241-262 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Bremia lactucae
Lettuce
downy mildew
lettuce
7 Citations (Scopus)

Classical and molecular genetics of Bremia lactucae, cause of lettuce downy mildew

Michelmore, R. W. & Wong, J., 2008, The Downy Mildews - Genetics, Molecular Biology and Control. Springer Netherlands, p. 19-30 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Lettuce
Molecular Biology
Oomycetes
Genes
Genomic Segmental Duplications
1 Citation (Scopus)

HIV and the mucosa: No safe haven

Dandekar, S., Sankaran-Walters, S. & Glavan, T., 2008, Immunity Against Mucosal Pathogens. Springer Netherlands, p. 459-481 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

HIV-1
Mucous Membrane
Virus Diseases
Lymphoid Tissue
Infection
23 Citations (Scopus)

Negative interactions with the microbiota: IBD

Salzman, N. H. & Bevins, C. L., 2008, Advances in Experimental Medicine and Biology. Vol. 635. p. 67-78 12 p. (Advances in Experimental Medicine and Biology; vol. 635).

Research output: Chapter in Book/Report/Conference proceedingChapter

Microbiota
Inflammatory Bowel Diseases
Dysbiosis
Inflammation
Intestinal Mucosa
2007
2 Citations (Scopus)

Coccidioidomycosis

Pappagianis, D. & Higgins, J., 2007, Equine Infectious Diseases. Elsevier Inc., p. 396-404 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

coccidioidomycosis
Coccidioidomycosis
2006
2 Citations (Scopus)

Pathogenomics of Salmonella Species

Andrews-Polymenis, H. & Baumler, A. J., May 10 2006, Pathogenomics: Genome Analysis of Pathogenic Microbes. John Wiley and Sons, p. 109-124 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Salmonella
2005
3 Citations (Scopus)

Old methods for new ideas: Genetic dissection of the determinants of gene expression levels

Kim, K., West, M. A. L., Michelmore, R. W., St. Clair, D. A. & Doerge, R. W., 2005, Genome Exploitation: Data Mining the Genome. Springer US, p. 89-107 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Dissection
Gene expression
Genes
Proteins
Design of experiments

The gut-brain axis in childhood developmental disorders: Viruses and vaccines

Wakefield, A. J., Ashwood, P. & Collins, I., Jan 1 2005, Neuropsychiatric Disorders and Infection. CRC Press, p. 198-206 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Autistic Disorder
Vaccines
Viruses
Brain
Inborn Genetic Diseases
2004
13 Citations (Scopus)

Paradoxical Role of Methyl-CpG-Binding Protein 2 in Rett Syndrome

LaSalle, J. M., 2004, Current Topics in Developmental Biology. Vol. 59. p. 61-86 26 p. (Current Topics in Developmental Biology; vol. 59).

Research output: Chapter in Book/Report/Conference proceedingChapter

Developmental Gene Expression Regulation
Non Histone Chromosomal Proteins
Methyl-CpG-Binding Protein 2
Repressor Proteins
Rett Syndrome
2002

18 Combined detection of low level her-2/neu expression and gene amplification in prostate cancer by immunofluorescence and fluorescence in situ hybridization

Gandour-Edwards, R. F. & LaSalle, J. M., 2002, Handbook of Immunohistochemistry and in Situ Hybridization of Human Carcinomas. Vol. 2. p. 457-461 5 p. (Handbook of Immunohistochemistry and in Situ Hybridization of Human Carcinomas; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingChapter

erbB-2 Genes
Gene Amplification
Fluorescence In Situ Hybridization
Fluorescent Antibody Technique
Prostatic Neoplasms
1976
1 Citation (Scopus)

In vitro hemolysis of autologous erythrocytes caused by immune murine spleen cells and spherules of the fungus coccidioides immitis

Danley, D. L., Pappagianis, D. & Benjamini, E., 1976, J.IMMUNOL.. 4 ed. Vol. 116. p. 970-975 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Coccidioides
Hemolysis
Fungi
Spleen
Erythrocytes
1975
5 Citations (Scopus)

Inhibition of Coccidioides immitis in vitro and enhancement of anticoccidioidal effects of amphotericin B by polymyxin B

Collins, M. S. & Pappagianis, D., 1975, ANTIMICROB.AGENTS CHEMOTHER.. 6 ed. Vol. 7. p. 781-787 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Coccidioides
Polymyxin B
Amphotericin B
Colistin
Nucleotides
1974
4 Citations (Scopus)

Spherulin as a complement fixing antigen in human coccidioidomycosis

Scalarone, G. M., Levine, H. B., Pappagianis, D. & Chaparas, S. D., 1974, AMER.REV.RESP.DIS.. 3 ed. Vol. 110. p. 324-328 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Coccidioidin
Coccidioidomycosis
Antigens
Serum
Coccidioides
1973
25 Citations (Scopus)

Coccidioidomycosis in Northern California: an outbreak among archeology students near Red Bluff

Werner, S. B. & Pappagianis, D., 1973, CALIF.MED.. 3 ed. Vol. 119. p. 16-20 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Archaeology
Coccidioidomycosis
Disease Outbreaks
Students
Precipitins